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OQ183418.1__WCO82022.1__vBPpSSYP_40__00040

Bact-Vir

OQ183418.1__WCO82022.1__vBPpSSYP_40__00040

Identity

Accession:
OQ183418 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PpS_SYP

TaxID: 3020390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-74
PDB
Domain cluster: rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00628__D7-79
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 38.0 3.22e-01 100.0% 32.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 40.0 3.11e-01 100.0% 26.9%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.62 37.0 3.02e-01 98.6% 30.4%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 50.0 3.73e-01 93.2% 90.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.60 35.0 2.88e-01 100.0% 28.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 4.00e-01 100.0% 83.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.52e-01 100.0% 65.8%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 36.0 2.85e-01 71.2% 62.3%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.72e-01 97.3% 84.2%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 2.95e-01 75.3% 34.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.39e-01 100.0% 67.7%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.52 45.0 3.57e-01 100.0% 81.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 34.0 3.54e-01 98.6% 75.4%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.58e-01 89.0% 63.2%
1dklB01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 39.0 2.76e-01 87.7% 40.6%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.51 40.0 3.34e-01 90.4% 56.0%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.53e-01 89.0% 62.3%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.61e-01 100.0% 82.5%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 26.0 2.83e-01 91.8% 50.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 46.0 3.64e-01 100.0% 84.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3828657 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 39.0 3.55e-01 100.0% 40.0%
3405941 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.68 35.0 3.67e-01 100.0% 51.5%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.68 38.0 3.22e-01 100.0% 32.3%
3933782 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.66 39.0 3.72e-01 100.0% 49.4%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.65 34.0 3.49e-01 100.0% 50.0%
3928361 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.61 37.0 3.03e-01 100.0% 30.7%
4028811 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.61 38.0 3.32e-01 100.0% 39.1%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 36.0 3.47e-01 100.0% 51.8%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.58 35.0 3.40e-01 100.0% 53.8%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 35.0 3.32e-01 100.0% 47.8%
4988323 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.56 46.0 4.35e-01 100.0% 77.8%
3181133 11.1.1.470 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Psg1 0.53 43.0 3.72e-01 90.4% 57.5%
3471370 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 36.0 3.33e-01 71.2% 53.0%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 35.0 3.89e-01 100.0% 90.9%
3236583 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 42.0 3.57e-01 90.4% 66.2%
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 35.0 3.69e-01 100.0% 78.5%
4104114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 34.0 3.53e-01 98.6% 73.8%
5049785 2.8.1.0 ↗ beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.52 36.0 3.93e-01 100.0% 100.0%
3237004 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 42.0 2.75e-01 93.2% 88.3%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 33.0 3.29e-01 100.0% 60.0%
3244649 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.51 33.0 3.21e-01 71.2% 57.6%
3244998 3223.1.1.0 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 0.51 41.0 3.81e-01 95.9% 84.8%
D2 medium residues 78-107
PDB
Domain cluster: representative