←Back to structures

OQ183418.1__WCO82072.1__vBPpSSYP_90__00090

Bact-Vir

OQ183418.1__WCO82072.1__vBPpSSYP_90__00090

Identity

Accession:
OQ183418 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PpS_SYP

TaxID: 3020390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-90
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.68 44.0 5.11e-01 81.3% 94.3%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 50.0 4.27e-01 100.0% 47.6%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 49.0 4.24e-01 100.0% 48.7%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 47.0 3.84e-01 100.0% 40.6%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 45.0 3.50e-01 100.0% 33.5%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 43.0 4.69e-01 90.7% 89.8%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 43.0 4.59e-01 73.3% 85.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.14e-01 96.0% 90.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.65e-01 97.3% 98.2%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.20e-01 88.0% 84.8%
4ddnA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.60 42.0 3.36e-01 74.7% 91.6%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 31.0 4.05e-01 74.7% 100.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.72e-01 100.0% 85.9%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.89e-01 89.3% 55.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 38.0 4.23e-01 84.0% 96.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.57 48.0 4.54e-01 97.3% 83.9%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.87e-01 89.3% 56.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.57 46.0 3.88e-01 93.3% 70.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.24e-01 98.7% 83.1%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.97e-01 89.3% 81.9%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.91e-01 89.3% 81.4%
3bywC00 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.56 48.0 3.79e-01 96.0% 71.2%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 40.0 4.19e-01 88.0% 90.6%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.55 38.0 3.70e-01 89.3% 64.0%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 42.0 3.65e-01 92.0% 51.6%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.09e-01 89.3% 72.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.48e-01 100.0% 100.0%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.54 49.0 3.85e-01 100.0% 71.4%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.18e-01 94.7% 99.0%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.61e-01 88.0% 67.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.54 43.0 3.87e-01 89.3% 96.4%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.29e-01 98.7% 55.2%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.53 45.0 3.50e-01 100.0% 42.2%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 44.0 4.38e-01 92.0% 100.0%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.77e-01 100.0% 87.1%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.53 43.0 3.22e-01 92.0% 88.5%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 41.0 3.65e-01 92.0% 56.4%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.54e-01 94.7% 83.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.95e-01 92.0% 75.7%
2a6hC03 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 32.0 2.42e-01 82.7% 25.0%
1nezH00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 3.96e-01 100.0% 80.8%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.30e-01 89.3% 65.6%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 39.0 3.04e-01 82.7% 96.0%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.13e-01 100.0% 81.6%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.80e-01 93.3% 26.9%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 45.0 3.38e-01 100.0% 80.3%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.84e-01 100.0% 64.8%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 42.0 3.83e-01 92.0% 80.4%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.04e-01 100.0% 70.8%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.02e-01 100.0% 71.8%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.85e-01 100.0% 65.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.95e-01 73.3% 94.9%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 45.0 4.37e-01 100.0% 97.6%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.50 40.0 3.53e-01 100.0% 58.1%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.88e-01 81.3% 98.2%
2033770 12.3.1.32 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › SOGP_2nd 0.69 52.0 3.53e-01 81.3% 44.8%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.32e-01 80.0% 97.1%
4397238 12.3.1.32 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › SOGP_2nd 0.67 51.0 3.45e-01 81.3% 44.6%
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 49.0 4.08e-01 100.0% 43.7%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 51.0 5.40e-01 96.0% 96.9%
3247329 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 46.0 4.01e-01 72.0% 88.2%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.66 52.0 5.48e-01 98.7% 98.5%
3259422 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.44e-01 92.0% 78.6%
3564088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 44.0 3.91e-01 70.7% 96.4%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 5.26e-01 96.0% 100.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 53.0 5.32e-01 100.0% 92.0%
3649433 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.64 40.0 3.69e-01 92.0% 49.5%
5034974 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 4.47e-01 88.0% 77.1%
3293763 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.62 49.0 3.69e-01 100.0% 34.7%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.71e-01 89.3% 98.2%
1030876 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.61 43.0 4.42e-01 73.3% 78.6%
3738978 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.05e-01 89.3% 67.9%
3217666 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 41.0 3.36e-01 70.7% 84.3%
997811 11.1.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E2_glycop 0.60 45.0 4.58e-01 97.3% 82.2%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.60 44.0 4.55e-01 88.0% 85.5%
3678668 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.60 40.0 3.63e-01 96.0% 49.1%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.77e-01 100.0% 92.9%
5035793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.68e-01 89.3% 87.1%
3408641 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 49.0 4.10e-01 93.3% 76.2%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.53e-01 93.3% 98.3%
3365004 11.1.1.973 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Self-incomp_S1 0.57 40.0 3.95e-01 90.7% 68.8%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.65e-01 98.7% 98.5%
3530263 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 46.0 3.94e-01 92.0% 73.8%
4078826 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 46.0 3.90e-01 90.7% 71.5%
4188272 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 44.0 3.46e-01 84.0% 96.9%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.49e-01 96.0% 100.0%
4994895 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 48.0 4.75e-01 100.0% 98.8%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.40e-01 100.0% 88.6%
3801890 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 42.0 3.11e-01 84.0% 30.0%
3172880 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 3.45e-01 94.7% 64.7%
3733041 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.56 47.0 3.62e-01 98.7% 81.6%
3393055 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.81e-01 88.0% 80.0%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.35e-01 100.0% 78.8%
3806045 11.1.4.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.55 39.0 4.04e-01 90.7% 80.0%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.55 40.0 3.72e-01 100.0% 59.2%
3620151 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 48.0 4.15e-01 100.0% 63.5%
3896652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.34e-01 98.7% 81.2%
3627339 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.54 48.0 3.54e-01 100.0% 68.0%
3744629 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.54 42.0 3.69e-01 89.3% 85.6%
3263883 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.54 45.0 2.78e-01 90.7% 27.0%
3633728 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.97e-01 93.3% 73.9%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.22e-01 100.0% 90.0%
4019707 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.50e-01 93.3% 48.8%
3520640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.38e-01 93.3% 43.8%
3749038 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.61e-01 90.7% 81.4%
3634755 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.70e-01 90.7% 66.4%
4067273 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 41.0 3.22e-01 86.7% 97.6%
3503754 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.45e-01 92.0% 69.3%
2532980 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.52 39.0 2.76e-01 82.7% 35.4%
3893368 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.52 40.0 4.18e-01 94.7% 100.0%
3625555 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 36.0 3.97e-01 72.0% 100.0%
3401352 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.67e-01 90.7% 87.5%
4217523 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 40.0 3.48e-01 90.7% 52.8%
3863344 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.54e-01 90.7% 70.8%
3386839 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 44.0 3.52e-01 97.3% 77.4%
3264990 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.68e-01 90.7% 71.3%
7410 219.1.1.64 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 0.51 45.0 3.39e-01 100.0% 80.7%
4139212 11.1.4.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.51 39.0 3.50e-01 84.0% 60.9%
3546790 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 40.0 3.25e-01 88.0% 73.5%
3564421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.68e-01 92.0% 83.5%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.51 40.0 3.99e-01 97.3% 85.0%
3569462 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.46e-01 92.0% 68.6%
3929257 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.50 39.0 3.91e-01 85.3% 97.5%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 40.0 3.50e-01 98.7% 56.7%
5002696 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.50 38.0 3.38e-01 98.7% 54.8%