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OQ183418.1__WCO82106.1__vBPpSSYP_124__00124

Bact-Vir

OQ183418.1__WCO82106.1__vBPpSSYP_124__00124

Identity

Accession:
OQ183418 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-51
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.71 53.0 4.27e-01 100.0% 41.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.70 59.0 5.12e-01 100.0% 68.4%
4nzfD02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 52.0 4.22e-01 100.0% 42.2%
1xp4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.70 48.0 2.99e-01 73.9% 98.1%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 58.0 4.58e-01 100.0% 51.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 56.0 4.61e-01 100.0% 64.1%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 58.0 4.99e-01 100.0% 63.0%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 46.0 2.93e-01 73.9% 98.7%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 55.0 3.97e-01 100.0% 90.7%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 54.0 5.19e-01 100.0% 92.7%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.27e-01 100.0% 54.5%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 56.0 4.21e-01 100.0% 68.1%
6x4tA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.19e-01 100.0% 58.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 54.0 5.32e-01 100.0% 92.0%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 55.0 4.79e-01 100.0% 62.5%
1p6oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 53.0 3.78e-01 100.0% 35.3%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.63 54.0 4.50e-01 100.0% 86.9%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.12e-01 100.0% 46.8%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 50.0 3.66e-01 100.0% 71.8%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 53.0 4.06e-01 100.0% 66.7%
1eayD00 3.30.70.400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CheY-binding domain of CheA 0.62 51.0 4.62e-01 100.0% 100.0%
3ue3A02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 45.0 3.31e-01 80.4% 78.9%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 49.0 3.22e-01 100.0% 32.7%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 42.0 2.72e-01 73.9% 99.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 48.0 3.67e-01 100.0% 49.3%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.61 52.0 3.75e-01 100.0% 41.3%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 46.0 3.44e-01 89.1% 39.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.60 48.0 4.37e-01 100.0% 65.2%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.60 41.0 3.09e-01 76.1% 28.3%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.60 51.0 3.74e-01 100.0% 37.6%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 48.0 3.48e-01 100.0% 31.5%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.60 50.0 3.95e-01 100.0% 100.0%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 45.0 3.73e-01 100.0% 44.0%
6genR01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 42.0 3.44e-01 100.0% 38.3%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.59 49.0 4.20e-01 100.0% 67.1%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 39.0 3.18e-01 76.1% 33.3%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.57 48.0 3.37e-01 100.0% 28.1%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.08e-01 78.3% 32.8%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.05e-01 78.3% 33.1%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 2.85e-01 78.3% 77.3%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 43.0 2.76e-01 100.0% 26.9%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 2.84e-01 100.0% 27.9%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 42.0 2.79e-01 100.0% 24.5%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 45.0 3.46e-01 100.0% 45.5%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 42.0 2.84e-01 100.0% 33.8%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 41.0 4.18e-01 97.8% 100.0%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 35.0 2.76e-01 78.3% 28.1%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 3.05e-01 97.8% 91.7%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.50 39.0 3.17e-01 100.0% 75.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083371 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 53.0 4.08e-01 97.8% 35.2%
3441684 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.71 61.0 5.83e-01 100.0% 87.3%
3196091 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.69 60.0 4.62e-01 100.0% 94.3%
3889864 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 4.84e-01 100.0% 69.1%
77927 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 55.0 4.56e-01 100.0% 61.7%
5034209 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 5.37e-01 100.0% 76.7%
5055982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 56.0 4.00e-01 100.0% 59.4%
3572391 712.1.1.1 beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat 0.66 55.0 3.71e-01 100.0% 97.9%
5000767 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 55.0 5.39e-01 100.0% 96.0%
3633409 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.66 51.0 4.24e-01 100.0% 48.8%
4996421 11.1.1.184 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.66 56.0 4.03e-01 100.0% 38.6%
3278973 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.65 49.0 5.05e-01 95.7% 97.5%
3533739 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 55.0 4.26e-01 100.0% 100.0%
3445562 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.65 55.0 3.70e-01 100.0% 30.9%
3469808 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 53.0 5.00e-01 100.0% 95.0%
4971610 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.25e-01 73.9% 80.8%
4065108 284.3.1.1 a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › Cloacin_immun 0.63 55.0 4.52e-01 100.0% 85.9%
3221959 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.63 53.0 3.63e-01 100.0% 26.5%
3344184 11.1.1.652 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.62 51.0 3.72e-01 100.0% 33.8%
3501051 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 54.0 4.06e-01 100.0% 57.4%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.62 53.0 3.29e-01 100.0% 17.3%
3800762 2011.1.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M17 0.62 50.0 3.25e-01 100.0% 19.6%
3586980 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 3.72e-01 100.0% 46.1%
5077363 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.14e-01 73.9% 80.0%
3976564 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 54.0 3.73e-01 100.0% 30.7%
2640865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 50.0 4.81e-01 100.0% 90.9%
5077132 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.15e-01 76.1% 33.1%
3976575 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 53.0 3.78e-01 100.0% 34.1%
3244077 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.60 49.0 4.59e-01 100.0% 85.0%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.60 49.0 3.89e-01 100.0% 43.5%
3909337 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 48.0 3.74e-01 100.0% 56.7%
3412235 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.59 49.0 3.58e-01 100.0% 95.9%
3404658 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.22e-01 100.0% 61.3%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 46.0 4.65e-01 97.8% 100.0%
3713011 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 47.0 2.97e-01 100.0% 24.6%
3248413 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.58 40.0 3.01e-01 76.1% 27.4%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.58 47.0 4.76e-01 97.8% 97.8%
3965375 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 41.0 3.04e-01 82.6% 65.3%
5044674 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.09e-01 80.4% 79.2%
5073557 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 2.91e-01 78.3% 75.0%
3256878 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 2.87e-01 78.3% 69.0%
4275468 223.1.1.95 a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.56 38.0 2.82e-01 82.6% 58.8%
4558763 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.55 39.0 2.97e-01 80.4% 76.3%
4021454 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 2.90e-01 78.3% 72.6%
4972248 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 2.97e-01 78.3% 29.2%
3601494 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.55 49.0 2.95e-01 100.0% 33.8%
4000826 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 48.0 3.47e-01 100.0% 43.1%
5050910 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.03e-01 80.4% 91.3%
4997750 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 2.84e-01 78.3% 28.9%
3615747 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 2.96e-01 100.0% 59.0%
3600598 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.20e-01 100.0% 87.1%
3177841 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.53 40.0 3.52e-01 100.0% 86.7%
5046495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 3.03e-01 76.1% 36.0%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 2.67e-01 78.3% 65.8%
3996654 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 2.85e-01 73.9% 32.7%
3407363 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.52 35.0 2.68e-01 76.1% 26.2%
4928792 312.1.1.1 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_transf 0.52 40.0 2.84e-01 93.5% 54.4%
5045489 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 36.0 2.78e-01 78.3% 82.2%
5053322 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 2.72e-01 80.4% 40.0%
3705774 223.2.1.42 a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.51 39.0 2.72e-01 100.0% 45.3%
3702172 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.50 39.0 3.50e-01 100.0% 61.5%