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OQ190481.1__WDS52067.1__SEA_CARON_41__00041

Bact-Vir

OQ190481.1__WDS52067.1__SEA_CARON_41__00041

Identity

Accession:
OQ190481 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Barnstormervirus› Microbacterium_phage_Caron

TaxID: 3028494

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-45
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.19e-01 100.0% 60.3%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 2.67e-01 81.4% 93.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416722 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.63 48.0 4.10e-01 90.7% 55.0%
3935543 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 38.0 3.06e-01 100.0% 77.5%
D2 high residues 61-109
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.80 57.0 5.30e-01 75.5% 67.7%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.73 51.0 3.63e-01 75.5% 32.2%
2g25A03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 60.0 4.06e-01 100.0% 89.1%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.62 44.0 3.25e-01 77.6% 82.9%
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.61 42.0 3.39e-01 73.5% 78.6%
5oomK00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.61 42.0 2.89e-01 73.5% 62.7%
3fdfA02 6.10.140.550 Special › Helix non-globular › Helix Hairpins › 0.60 47.0 4.58e-01 100.0% 78.6%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 50.0 4.08e-01 100.0% 79.2%
3p26A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 47.0 3.15e-01 100.0% 74.8%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 40.0 2.94e-01 91.8% 93.9%
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.53 42.0 3.45e-01 89.8% 48.4%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 44.0 3.10e-01 100.0% 60.1%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 2.86e-01 77.6% 70.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3348574 109.4.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.83 55.0 3.52e-01 71.4% 15.8%
5005687 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.63 46.0 3.43e-01 79.6% 46.4%
3989004 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 53.0 3.24e-01 98.0% 63.5%
2126757 170.2.1.1 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 0.62 44.0 3.25e-01 77.6% 82.9%
3693975 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.61 49.0 3.81e-01 100.0% 68.5%
4939614 2004.1.1.234 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_D3-like 0.60 46.0 3.03e-01 87.8% 26.7%
3644609 109.4.1.2210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30701 0.59 51.0 3.00e-01 100.0% 24.5%
4546371 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.59 48.0 3.73e-01 95.9% 100.0%
4176536 4303.1.1.1 ↗ alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD 0.57 46.0 2.82e-01 98.0% 36.6%
3443127 1.1.1.9 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.56 46.0 2.92e-01 91.8% 76.1%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 49.0 4.25e-01 98.0% 64.0%
3288524 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.55 45.0 3.02e-01 100.0% 73.9%
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 45.0 3.80e-01 100.0% 54.4%
3732775 2007.2.2.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › Ssu72 0.53 41.0 2.81e-01 100.0% 59.8%
3182134 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 3.72e-01 89.8% 66.2%