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OQ190481.1__WDS52101.1__SEA_CARON_75__00075
Bact-VirOQ190481.1__WDS52101.1__SEA_CARON_75__00075
Identity
- Accession:
- OQ190481 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casidaviridae›
Barnstormervirus›
Microbacterium_phage_Caron
TaxID: 3028494
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
rep: MH271320.1__AWY06698.1__SEA_ZETA1847_64__00064__D31-90
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.70 | 43.0 | 3.61e-01 | 81.4% | 35.5% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 47.0 | 4.43e-01 | 72.9% | 58.8% |
| 2nx4C00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 53.0 | 3.90e-01 | 97.1% | 32.1% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.67 | 46.0 | 4.91e-01 | 78.6% | 83.3% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 45.0 | 5.00e-01 | 87.1% | 92.3% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 49.0 | 4.17e-01 | 80.0% | 77.0% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.65 | 42.0 | 4.63e-01 | 72.9% | 86.8% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 45.0 | 3.48e-01 | 72.9% | 67.1% |
| 1xoiA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 45.0 | 2.73e-01 | 75.7% | 44.6% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 47.0 | 3.64e-01 | 97.1% | 34.1% |
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 49.0 | 3.59e-01 | 97.1% | 31.8% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 44.0 | 4.81e-01 | 91.4% | 93.0% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 46.0 | 3.70e-01 | 81.4% | 55.6% |
| 3wmeA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.61 | 50.0 | 3.21e-01 | 88.6% | 96.6% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 45.0 | 4.42e-01 | 92.9% | 73.3% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.59 | 46.0 | 4.65e-01 | 84.3% | 89.7% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.59 | 46.0 | 4.03e-01 | 85.7% | 56.9% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.58 | 51.0 | 3.80e-01 | 100.0% | 88.5% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.57 | 36.0 | 3.19e-01 | 98.6% | 42.5% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 40.0 | 2.99e-01 | 72.9% | 28.0% |
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.57 | 49.0 | 2.95e-01 | 98.6% | 22.1% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.56 | 35.0 | 4.30e-01 | 100.0% | 100.0% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 38.0 | 4.00e-01 | 91.4% | 84.5% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.56 | 46.0 | 3.33e-01 | 95.7% | 49.8% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.55 | 41.0 | 3.55e-01 | 84.3% | 63.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 37.0 | 4.29e-01 | 91.4% | 94.1% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.54 | 41.0 | 4.25e-01 | 100.0% | 88.1% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 3.21e-01 | 100.0% | 33.9% |
| 4s3mB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 41.0 | 3.69e-01 | 87.1% | 57.5% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 45.0 | 3.07e-01 | 94.3% | 34.2% |
| 1f75A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.52 | 46.0 | 3.23e-01 | 97.1% | 55.8% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 45.0 | 3.94e-01 | 95.7% | 71.4% |
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.51 | 40.0 | 3.60e-01 | 88.6% | 59.6% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.51 | 46.0 | 3.48e-01 | 100.0% | 61.7% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 38.0 | 3.26e-01 | 100.0% | 47.2% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 37.0 | 3.96e-01 | 88.6% | 93.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588971 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.69 | 47.0 | 4.60e-01 | 80.0% | 65.3% |
| 4292774 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 56.0 | 3.85e-01 | 91.4% | 25.6% |
| 4135840 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 56.0 | 3.52e-01 | 91.4% | 16.6% |
| 3220045 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 50.0 | 4.12e-01 | 80.0% | 53.8% |
| 2622460 | 3396.1.1.1 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N | 0.66 | 45.0 | 4.59e-01 | 85.7% | 71.4% |
| 4540106 | 3396.1.1.3 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 | 0.66 | 46.0 | 4.40e-01 | 85.7% | 62.5% |
| 4519331 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.66 | 54.0 | 3.39e-01 | 91.4% | 17.4% |
| 3774563 | 5063.1.1.12 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › ApoO | 0.65 | 49.0 | 4.26e-01 | 81.4% | 51.8% |
| 3271069 | 3352.1.1.21 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 | 0.65 | 56.0 | 3.61e-01 | 100.0% | 20.9% |
| 3367703 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.64 | 42.0 | 3.50e-01 | 82.9% | 37.6% |
| 4485359 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.63 | 47.0 | 4.23e-01 | 87.1% | 57.9% |
| 3389798 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.62 | 46.0 | 4.65e-01 | 92.9% | 81.4% |
| 4946099 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.62 | 39.0 | 3.70e-01 | 100.0% | 54.2% |
| 3963152 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.61 | 42.0 | 2.66e-01 | 88.6% | 14.5% |
| 3785306 | 3352.1.1.21 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 | 0.61 | 51.0 | 3.17e-01 | 94.3% | 36.4% |
| 3421325 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 46.0 | 4.42e-01 | 81.4% | 77.5% |
| 4663797 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.60 | 42.0 | 3.08e-01 | 78.6% | 27.6% |
| 2617308 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.59 | 45.0 | 2.89e-01 | 84.3% | 68.4% |
| 3280988 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 46.0 | 4.45e-01 | 84.3% | 76.2% |
| 3806441 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.59 | 51.0 | 3.39e-01 | 98.6% | 67.5% |
| 3435497 | 5058.1.1.7 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM135_C_rich | 0.59 | 47.0 | 4.11e-01 | 90.0% | 74.5% |
| 3756471 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.58 | 48.0 | 4.10e-01 | 91.4% | 70.4% |
| 3248311 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.58 | 49.0 | 3.36e-01 | 100.0% | 69.2% |
| 3508429 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.57 | 47.0 | 3.17e-01 | 91.4% | 68.4% |
| 5022286 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.55 | 41.0 | 3.33e-01 | 80.0% | 91.1% |
| 3229717 | 3470.1.1.29 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV | 0.55 | 42.0 | 4.29e-01 | 90.0% | 82.9% |
| 4996194 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.54 | 43.0 | 3.93e-01 | 94.3% | 65.6% |
| 3836427 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 45.0 | 4.02e-01 | 100.0% | 64.0% |
| 3580104 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 48.0 | 4.34e-01 | 98.6% | 72.6% |
| 3507551 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.54 | 47.0 | 4.24e-01 | 100.0% | 70.5% |
| 3685214 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.54 | 40.0 | 3.78e-01 | 80.0% | 84.7% |
| 3410271 | 4120.1.1.40 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › ASC | 0.53 | 40.0 | 3.51e-01 | 97.1% | 53.3% |
| 4324592 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.53 | 43.0 | 3.82e-01 | 94.3% | 62.0% |
| 4981299 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.53 | 44.0 | 3.90e-01 | 98.6% | 64.0% |
| 3471396 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.53 | 44.0 | 3.96e-01 | 92.9% | 66.3% |
| 4943088 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.53 | 47.0 | 3.67e-01 | 100.0% | 46.7% |
| 3813837 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.52 | 43.0 | 4.20e-01 | 91.4% | 81.3% |
| 3938318 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.52 | 44.0 | 3.65e-01 | 100.0% | 54.2% |
| 3855880 | 622.4.1.19 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › CD20 | 0.51 | 43.0 | 3.74e-01 | 100.0% | 61.9% |