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OQ190482.1__WDS52116.1__SEA_UTZCHIPS_10__00010

Bact-Vir

OQ190482.1__WDS52116.1__SEA_UTZCHIPS_10__00010

Identity

Accession:
OQ190482 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-134
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.78 68.0 7.09e-01 100.0% 100.0%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.77 70.0 7.01e-01 96.2% 100.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.75 69.0 6.81e-01 100.0% 99.3%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.74 66.0 6.73e-01 96.9% 100.0%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.70 64.0 6.25e-01 100.0% 99.3%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 4.26e-01 70.0% 73.6%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 4.57e-01 87.7% 83.3%
3od1A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 54.0 4.07e-01 97.7% 95.0%
3netB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 54.0 4.07e-01 99.2% 96.8%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 53.0 4.16e-01 96.9% 99.3%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 28.0 3.74e-01 71.5% 87.7%
3fcsA03 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.58 40.0 3.94e-01 70.0% 74.1%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 4.69e-01 85.4% 85.9%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.57 41.0 4.42e-01 99.2% 87.2%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 43.0 3.91e-01 79.2% 88.1%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.56 36.0 3.74e-01 97.7% 69.5%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 49.0 4.14e-01 96.2% 80.1%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 48.0 4.16e-01 96.9% 81.0%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 48.0 4.12e-01 96.2% 80.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.55 43.0 4.21e-01 100.0% 75.0%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 43.0 4.26e-01 100.0% 80.0%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.54 35.0 3.85e-01 89.2% 81.0%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 42.0 4.11e-01 83.1% 97.8%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.84e-01 82.3% 80.9%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 40.0 3.80e-01 100.0% 68.2%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.53 44.0 4.25e-01 89.2% 80.4%
1ie0A00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.53 41.0 3.90e-01 83.8% 69.2%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 4.01e-01 83.1% 95.9%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.52 41.0 4.04e-01 100.0% 75.7%
3ayhB01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.52 32.0 3.86e-01 100.0% 100.0%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 4.00e-01 83.8% 92.9%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.44e-01 97.7% 57.6%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 4.09e-01 81.5% 100.0%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 4.15e-01 89.2% 97.1%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 4.09e-01 84.6% 98.4%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.93e-01 83.8% 94.9%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.73e-01 88.5% 91.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004177 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.81 74.0 7.54e-01 96.2% 100.0%
3941902 304.124.1.7 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Minor_capsid_3 0.80 73.0 7.48e-01 96.2% 100.0%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.78 73.0 6.92e-01 100.0% 99.3%
5083619 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 71.0 6.87e-01 98.5% 100.0%
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 69.0 7.03e-01 94.6% 100.0%
4928893 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 71.0 6.80e-01 98.5% 100.0%
2642577 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.77 71.0 7.02e-01 98.5% 99.3%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.75 68.0 6.80e-01 98.5% 99.3%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.74 66.0 6.62e-01 97.7% 98.5%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 64.0 6.53e-01 94.6% 100.0%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.71 64.0 6.53e-01 96.2% 100.0%
4196274 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.71 46.0 4.87e-01 74.6% 73.9%
4342449 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.70 47.0 4.86e-01 70.0% 72.5%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.69 60.0 6.24e-01 95.4% 100.0%
4319533 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.68 50.0 4.88e-01 75.4% 75.7%
4028502 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.66 44.0 4.60e-01 76.2% 72.5%
5007992 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.65 42.0 4.24e-01 70.8% 64.6%
5004168 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 40.0 4.34e-01 71.5% 72.7%
3604221 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.64 45.0 4.34e-01 86.9% 64.8%
4935045 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.63 42.0 4.06e-01 83.1% 60.1%
3280323 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.61 43.0 4.79e-01 100.0% 89.5%
4928967 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.12e-01 70.8% 69.8%
3251738 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.60 41.0 4.62e-01 80.0% 90.0%
5038095 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.60 33.0 3.39e-01 97.7% 56.8%
4987319 1036.1.1.2 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.60 41.0 4.43e-01 100.0% 82.7%
3224729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 42.0 4.79e-01 87.7% 100.0%
3274387 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.59 42.0 4.56e-01 83.8% 86.4%
3610122 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 4.59e-01 70.0% 98.9%
5042875 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 36.0 4.02e-01 70.8% 76.7%
3314191 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.58 52.0 3.79e-01 97.7% 93.5%
5034560 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.58 33.0 3.47e-01 98.5% 60.8%
4013494 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.94e-01 86.2% 64.8%
5019198 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 46.0 4.93e-01 90.0% 97.4%
3522631 243.3.1.28 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Spp-24 0.57 38.0 4.10e-01 100.0% 78.3%
5069076 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.57 32.0 3.41e-01 97.7% 61.7%
4002212 2007.2.3.24 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561 0.56 48.0 3.47e-01 95.4% 79.8%
3724413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 4.14e-01 70.8% 99.1%
4932446 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.56 32.0 3.40e-01 98.5% 62.5%
5034688 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.56 38.0 3.68e-01 70.8% 61.4%
5030898 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.56 33.0 3.43e-01 99.2% 63.3%
5055306 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.62e-01 85.4% 55.8%
3275804 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.55 43.0 4.49e-01 84.6% 89.2%
6403 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.55 43.0 4.26e-01 100.0% 77.1%
3213160 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.55 48.0 4.31e-01 98.5% 84.9%
3496210 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.54 47.0 4.18e-01 94.6% 91.4%
4352488 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.54 42.0 4.07e-01 100.0% 72.5%
4565299 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.54 43.0 4.15e-01 100.0% 75.7%
3992575 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 45.0 4.19e-01 94.6% 72.1%
4373837 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.53 43.0 4.21e-01 100.0% 78.6%
5017300 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 37.0 3.87e-01 99.2% 77.5%
5049686 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.25e-01 89.2% 82.1%
3955095 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.53 45.0 3.94e-01 93.1% 73.4%
6409 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.53 41.0 3.84e-01 82.3% 80.9%
1146698 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.53 41.0 4.09e-01 83.1% 97.9%
4974050 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.52 41.0 4.08e-01 83.1% 93.3%
1146680 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.52 42.0 4.04e-01 100.0% 76.4%
3931830 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.52 46.0 4.10e-01 95.4% 81.7%
3694979 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 44.0 3.92e-01 93.8% 93.7%
4315252 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 43.0 4.14e-01 89.2% 93.8%
399927 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 42.0 4.00e-01 89.2% 91.5%
5041335 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 39.0 3.74e-01 82.3% 89.7%
4582733 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 38.0 3.87e-01 79.2% 80.0%
3290484 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 43.0 3.91e-01 96.2% 68.6%
3285854 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.50 42.0 4.23e-01 96.9% 89.9%
5072383 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.50 42.0 4.07e-01 89.2% 91.0%
4016448 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.50 42.0 4.06e-01 89.2% 100.0%
3164250 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.50 45.0 3.41e-01 100.0% 67.8%