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OQ198719.1__WEU69869.1__X__00023

Bact-Vir

OQ198719.1__WEU69869.1__X__00023

Identity

Accession:
OQ198719 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Intestiviridae› Rudgehvirus› Rudgehvirus_jaberico

TaxID: 3432208

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-101
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.75 65.0 6.26e-01 100.0% 83.1%
1dx5M02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 3.89e-01 73.1% 88.2%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 37.0 3.76e-01 71.8% 58.4%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.62 40.0 3.08e-01 73.1% 30.5%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 38.0 3.57e-01 73.1% 51.1%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.60 39.0 3.21e-01 73.1% 36.6%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 42.0 3.33e-01 73.1% 64.3%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.71e-01 70.5% 53.9%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.80e-01 70.5% 61.3%
1p6oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 40.0 3.23e-01 74.4% 73.1%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.19e-01 73.1% 42.9%
6w6vE01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.56 49.0 3.98e-01 100.0% 97.4%
6x4tA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.40e-01 73.1% 66.1%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.54 37.0 3.28e-01 71.8% 91.7%
1lcsA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.53 40.0 3.01e-01 82.1% 97.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 38.0 3.74e-01 78.2% 98.8%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.38e-01 71.8% 59.8%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.52 38.0 3.15e-01 78.2% 46.4%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 35.0 3.12e-01 70.5% 54.5%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 37.0 3.28e-01 80.8% 97.7%
1vjkA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 34.0 3.37e-01 70.5% 90.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.84 78.0 6.74e-01 100.0% 82.6%
4515517 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.78 71.0 6.75e-01 98.7% 85.6%
4468826 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 70.0 6.50e-01 98.7% 80.0%
4457400 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 71.0 6.38e-01 100.0% 77.1%
4974405 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 71.0 6.76e-01 100.0% 87.8%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 70.0 5.75e-01 98.7% 83.7%
3588392 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 71.0 6.48e-01 100.0% 78.0%
4111785 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 70.0 6.49e-01 100.0% 81.1%
4945828 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 70.0 6.63e-01 98.7% 86.7%
4977317 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.76 70.0 5.98e-01 100.0% 64.7%
4170310 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.76 69.0 6.55e-01 98.7% 85.6%
3600334 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 39.0 3.75e-01 71.8% 52.2%
3213622 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.63 41.0 3.36e-01 73.1% 36.1%
5080817 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 3.58e-01 74.4% 46.7%
5037019 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 3.65e-01 70.5% 53.7%
5055065 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 3.91e-01 73.1% 66.7%
3472667 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 39.0 3.18e-01 73.1% 35.2%
3601005 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 35.0 3.30e-01 73.1% 48.4%
5062311 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.29e-01 71.8% 42.2%
5055982 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.23e-01 73.1% 61.3%
3601329 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 36.0 3.38e-01 73.1% 51.6%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 39.0 2.63e-01 70.5% 100.0%
3518924 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.57 40.0 2.93e-01 73.1% 36.5%
4295852 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.56 39.0 3.24e-01 74.4% 82.0%
3572391 712.1.1.1 ↗ beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat 0.56 39.0 2.97e-01 73.1% 100.0%
3817786 7516.1.1.135 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF7780 0.56 47.0 3.18e-01 96.2% 62.1%
3557603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.53e-01 71.8% 60.0%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 40.0 4.39e-01 75.6% 100.0%
3909337 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 41.0 3.58e-01 79.5% 59.2%
3743200 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 38.0 3.04e-01 74.4% 75.9%
4024492 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.52 36.0 3.22e-01 71.8% 50.9%
3256878 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.07e-01 75.6% 98.6%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.51 42.0 3.87e-01 97.4% 67.6%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.50 38.0 2.86e-01 83.3% 67.6%
D2 high residues 119-191
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_039364-3300045988-Ga0495776_000344_76889_77461__D110-188
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.69e-01 75.3% 75.8%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 43.0 3.30e-01 87.7% 100.0%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 39.0 3.62e-01 97.3% 58.1%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.32e-01 100.0% 63.3%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 3.05e-01 97.3% 52.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967414 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 36.0 4.30e-01 86.3% 78.0%
4319035 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.61 39.0 4.03e-01 89.0% 68.1%
3950412 11.1.4.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.59 41.0 4.06e-01 100.0% 69.3%
4256432 11.1.4.72 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd 0.55 39.0 3.80e-01 100.0% 67.5%
4001819 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.51 35.0 3.25e-01 86.3% 55.8%
3998997 389.1.2.9 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.51 35.0 3.32e-01 86.3% 58.9%
3783241 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.51 35.0 2.91e-01 74.0% 58.6%
D3 high residues 202-271
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028330 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.57 47.0 3.33e-01 100.0% 28.1%