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OQ201593.1__WDE67655.1__RitVan_9__00009

Bact-Vir

OQ201593.1__WDE67655.1__RitVan_9__00009

Identity

Accession:
OQ201593 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Liefievirus› Mycobacterium_phage_RitVan

TaxID: 3020384

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-111
PDB
Domain cluster: rep: BK061310.1__DAZ90147.1__PROPHIFVLQ01-1_60__00060__D8-107
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 47.0 3.69e-01 82.5% 40.5%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.61 30.0 3.30e-01 97.9% 56.1%
1at9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 45.0 3.43e-01 79.4% 60.0%
5j6bD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 44.0 3.15e-01 82.5% 39.4%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 44.0 3.19e-01 85.6% 40.4%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 43.0 3.40e-01 82.5% 41.9%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 44.0 3.20e-01 82.5% 40.2%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.56 42.0 4.21e-01 79.4% 80.2%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 43.0 3.11e-01 82.5% 39.8%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 28.0 3.08e-01 100.0% 59.7%
1hn0A02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 38.0 2.67e-01 80.4% 72.7%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 36.0 4.02e-01 79.4% 93.3%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.51 36.0 2.99e-01 73.2% 91.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 39.0 4.11e-01 99.0% 94.3%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.50 38.0 2.75e-01 80.4% 72.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963507 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.69 63.0 6.06e-01 100.0% 91.8%
3725212 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.56 44.0 3.17e-01 85.6% 37.3%
5078641 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 29.0 3.19e-01 95.9% 60.8%
3526298 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 46.0 3.25e-01 90.7% 48.1%
1902479 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.55 43.0 3.20e-01 83.5% 45.7%
5044067 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 36.0 3.79e-01 82.5% 73.3%
4952130 3714.1.1.1 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.54 41.0 3.13e-01 82.5% 33.5%
3727157 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.54 42.0 3.91e-01 83.5% 97.6%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 40.0 3.11e-01 80.4% 86.2%
3885988 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.53 41.0 3.36e-01 82.5% 69.7%
4408503 192.2.1.43 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N 0.53 37.0 3.30e-01 71.1% 82.2%
3211404 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.52 40.0 2.93e-01 83.5% 56.0%
5029389 601.17.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen 0.52 42.0 3.67e-01 87.6% 97.9%
5069526 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 31.0 3.34e-01 87.6% 68.2%
3781882 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.51 39.0 2.79e-01 82.5% 94.0%
4940657 101.1.2.269 ↗ alpha arrays › HTH › HTH › winged helix domain › SocA_Panacea 0.51 43.0 3.65e-01 93.8% 92.7%