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OQ221557.1__WCF57223.1__PhiCrAssBcn22_71__00070

Bact-Vir

OQ221557.1__WCF57223.1__PhiCrAssBcn22_71__00070

Identity

Accession:
OQ221557 ↗
Kingdom:
phage

Quality

49.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Kehishuvirus› Bacteroides_phage_PhiCrAssBcn22

TaxID: 3023105

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 244-326
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 46.0 3.24e-01 83.1% 60.2%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 41.0 3.64e-01 75.9% 91.0%
4hnvB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 44.0 2.94e-01 84.3% 49.7%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.19e-01 71.1% 86.4%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 40.0 3.08e-01 74.7% 100.0%
1a9xA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 40.0 3.06e-01 75.9% 79.3%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.56 39.0 3.24e-01 73.5% 59.1%
1kjqB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 43.0 3.32e-01 84.3% 97.9%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 41.0 3.23e-01 79.5% 85.6%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.47e-01 78.3% 53.7%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 48.0 3.13e-01 100.0% 65.9%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 46.0 3.11e-01 98.8% 62.0%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 37.0 3.11e-01 72.3% 56.8%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 38.0 3.39e-01 74.7% 64.5%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.93e-01 92.8% 55.6%
1dv2A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 40.0 2.86e-01 83.1% 58.4%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 38.0 2.95e-01 73.5% 49.4%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.71e-01 86.7% 94.2%
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.94e-01 79.5% 76.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.26e-01 71.1% 93.9%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 37.0 3.73e-01 77.1% 93.1%
2re2A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.52 40.0 3.60e-01 84.3% 100.0%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.51 36.0 3.19e-01 74.7% 79.4%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 37.0 3.26e-01 75.9% 67.2%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.51 39.0 3.27e-01 86.7% 75.6%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.51 36.0 2.97e-01 74.7% 65.2%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 43.0 2.97e-01 95.2% 46.1%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 35.0 3.38e-01 72.3% 68.4%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 45.0 2.88e-01 100.0% 54.0%
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.46e-01 88.0% 82.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938213 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.62 44.0 3.36e-01 75.9% 55.1%
4002789 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 46.0 4.31e-01 80.7% 96.2%
3926830 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 41.0 3.75e-01 71.1% 72.7%
3834362 3832.1.1.2 ↗ alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › PF25968 0.59 49.0 3.02e-01 94.0% 28.9%
1199755 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.59 46.0 3.26e-01 83.1% 61.4%
3509348 214.1.1.15 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.59 53.0 3.58e-01 100.0% 39.0%
3203695 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 45.0 3.03e-01 83.1% 65.5%
3457030 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.58 42.0 3.17e-01 75.9% 40.0%
None — 0.57 43.0 3.07e-01 79.5% 64.5%
4520582 206.1.3.63 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A, CPSase_L_D2 0.57 44.0 3.06e-01 83.1% 68.4%
5039412 5.1.4.665 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.57 50.0 3.26e-01 100.0% 46.7%
3315195 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.57 41.0 2.97e-01 75.9% 34.8%
5040052 5.1.4.665 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.57 50.0 3.26e-01 100.0% 61.3%
3473974 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 42.0 3.55e-01 80.7% 69.7%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.56 43.0 3.55e-01 83.1% 70.3%
4959210 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.56 43.0 3.06e-01 83.1% 72.3%
5031218 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.56 43.0 2.96e-01 81.9% 65.7%
4494257 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.56 42.0 3.31e-01 80.7% 65.0%
3429608 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 39.0 2.23e-01 88.0% 7.0%
4971831 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.56 43.0 2.97e-01 83.1% 67.6%
5000069 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.55 38.0 2.89e-01 71.1% 50.3%
5021262 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.55 41.0 2.87e-01 79.5% 60.4%
4942749 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.55 38.0 2.90e-01 71.1% 49.2%
3433417 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 42.0 4.00e-01 86.7% 97.1%
3980864 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 40.0 2.88e-01 80.7% 58.5%
3923809 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 39.0 3.32e-01 75.9% 80.7%
5038625 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.54 47.0 3.00e-01 100.0% 58.9%
5041294 5.1.4.665 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.54 48.0 3.25e-01 100.0% 70.5%
3634739 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 2.89e-01 100.0% 37.5%
3593777 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.86e-01 100.0% 34.8%
4888997 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 45.0 2.98e-01 100.0% 50.5%
5073504 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.53 38.0 2.52e-01 77.1% 39.2%
3599747 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 45.0 3.01e-01 96.4% 58.2%
3288799 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.52 40.0 2.73e-01 83.1% 51.1%
4643450 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 40.0 3.33e-01 86.7% 55.6%
4991620 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 36.0 3.29e-01 74.7% 73.9%
None — 0.51 36.0 2.25e-01 75.9% 30.6%
4963804 2484.1.1.339 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › acVLRF1 0.50 36.0 3.09e-01 75.9% 75.4%
4862662 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.50 43.0 2.89e-01 100.0% 52.2%
D2 medium residues 181-240
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.58 41.0 3.97e-01 93.3% 64.8%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 37.0 2.86e-01 70.0% 64.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.43e-01 75.0% 58.2%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.55 37.0 3.49e-01 71.7% 66.2%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 35.0 3.06e-01 71.7% 41.3%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 40.0 3.08e-01 83.3% 73.3%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.38e-01 73.3% 56.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 36.0 2.85e-01 85.0% 32.1%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 37.0 2.61e-01 81.7% 62.3%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 2.29e-01 81.7% 15.9%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 36.0 2.83e-01 78.3% 37.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315597 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.63 43.0 3.99e-01 71.7% 60.8%
2411782 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.63 49.0 3.80e-01 88.3% 82.4%
3739035 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.26e-01 73.3% 76.7%
None — 0.58 40.0 2.56e-01 75.0% 27.6%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 40.0 2.61e-01 76.7% 14.1%
3270165 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.58 40.0 2.56e-01 75.0% 50.1%
3191646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.07e-01 75.0% 85.0%
3964934 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 41.0 2.39e-01 75.0% 11.8%
3925733 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.57 41.0 2.58e-01 78.3% 27.3%
3257407 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.57 41.0 2.61e-01 78.3% 52.7%
3596062 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.57 40.0 3.17e-01 75.0% 73.1%
3272716 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.56 42.0 2.67e-01 83.3% 52.5%
3935664 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.56 39.0 2.45e-01 73.3% 24.8%
3374847 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.56 40.0 2.57e-01 76.7% 20.0%
3396830 7579.1.1.28 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.56 39.0 2.49e-01 75.0% 52.5%
4147949 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 38.0 2.32e-01 71.7% 11.5%
3224815 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 37.0 3.06e-01 73.3% 36.5%
None — 0.55 39.0 2.52e-01 80.0% 49.9%
3915050 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 36.0 2.34e-01 70.0% 20.0%
3870034 5.1.3.161 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_6 0.53 38.0 2.46e-01 81.7% 24.5%
3211871 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.53 37.0 2.52e-01 75.0% 65.3%
3367730 5.1.1.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › FBA_1 0.51 44.0 3.27e-01 100.0% 79.4%
3636874 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.51 44.0 3.43e-01 100.0% 95.0%
5082431 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 37.0 2.42e-01 80.0% 28.5%
3944872 7503.1.1.10 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CadC_C1 0.50 44.0 3.40e-01 100.0% 99.3%
D3 medium residues 340-426
PDB
D4 medium residues 884-1039
PDB
D5 medium residues 1040-1107
PDB