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OQ240253.1__WCZ54872.1__X__00030
Bact-VirOQ240253.1__WCZ54872.1__X__00030
Identity
- Accession:
- OQ240253 ↗
- Kingdom:
- phage
Quality
62.6
mean pLDDT
Taxonomy
TaxID: 3027591
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-55
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07410.18 best | Phage_Gp111 | 59.0 | 5.90e-16 | 94.1% | 59.2% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.83 | 74.0 | 6.05e-01 | 98.0% | 62.6% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 57.0 | 4.55e-01 | 80.4% | 41.8% |
| 2rhmC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 61.0 | 4.11e-01 | 90.2% | 36.8% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.71 | 61.0 | 3.78e-01 | 100.0% | 82.4% |
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.70 | 57.0 | 3.32e-01 | 98.0% | 10.5% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.70 | 58.0 | 4.15e-01 | 94.1% | 44.5% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.69 | 53.0 | 3.86e-01 | 84.3% | 63.1% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 53.0 | 3.94e-01 | 88.2% | 34.7% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 53.0 | 4.23e-01 | 90.2% | 45.4% |
| 2qgnA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.66 | 57.0 | 4.90e-01 | 100.0% | 93.9% |
| 3n98A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.64 | 58.0 | 3.39e-01 | 100.0% | 80.5% |
| 5hc8A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.63 | 45.0 | 3.01e-01 | 88.2% | 17.4% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.62 | 53.0 | 3.53e-01 | 100.0% | 36.3% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 49.0 | 4.01e-01 | 88.2% | 94.5% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 47.0 | 4.01e-01 | 92.2% | 77.7% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 53.0 | 3.64e-01 | 98.0% | 43.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 47.0 | 3.95e-01 | 90.2% | 51.2% |
| 3moiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 51.0 | 3.56e-01 | 100.0% | 55.4% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 44.0 | 4.31e-01 | 86.3% | 75.9% |
| 3vz3A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 46.0 | 3.02e-01 | 96.1% | 18.6% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 47.0 | 3.53e-01 | 96.1% | 91.9% |
| 4ryaA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 44.0 | 3.04e-01 | 90.2% | 67.6% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 45.0 | 3.00e-01 | 100.0% | 19.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.55 | 40.0 | 3.55e-01 | 84.3% | 82.8% |
| 5f7vA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 46.0 | 2.75e-01 | 96.1% | 13.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2140371 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 56.0 | 4.94e-01 | 78.4% | 58.1% |
| 3753240 | 3291.1.1.54 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 | 0.73 | 58.0 | 3.90e-01 | 88.2% | 25.3% |
| 3906819 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.72 | 57.0 | 4.00e-01 | 88.2% | 28.7% |
| 4020548 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.70 | 56.0 | 3.51e-01 | 94.1% | 15.9% |
| 3652772 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 46.0 | 2.71e-01 | 84.3% | 9.5% |
| 5070372 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.67 | 54.0 | 4.45e-01 | 88.2% | 64.4% |
| 5012985 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.65 | 55.0 | 3.64e-01 | 94.1% | 24.1% |
| 4478129 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.62 | 46.0 | 3.91e-01 | 82.4% | 48.9% |
| 5010827 | 7523.1.1.28 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 | 0.61 | 44.0 | 2.68e-01 | 82.4% | 10.4% |
| 4007651 | 6055.1.1.24 ↗ | extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › DUF1422 | 0.60 | 52.0 | 4.45e-01 | 94.1% | 83.7% |
D2
high
residues 62-135