←Back to structures

OQ240256.1__WEU69523.1__X__00036

Bact-Vir

OQ240256.1__WEU69523.1__X__00036

Identity

Accession:
OQ240256 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latilactobacillus_phage_TMW_1.1365_P2

TaxID: 3027585

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 62.0 6.56e-01 79.7% 94.1%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 70.0 5.65e-01 94.9% 50.4%
1gw5A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 45.0 2.60e-01 72.9% 7.4%
1vzsA01 1.10.246.110 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 0.58 39.0 3.89e-01 83.1% 66.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666875 1025.1.1.4 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › DUF641 0.81 66.0 6.06e-01 88.1% 69.3%
3914660 604.1.1.95 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.81 72.0 6.32e-01 98.3% 67.1%
5024703 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.79 61.0 4.22e-01 84.7% 25.8%
4936633 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.77 62.0 4.18e-01 89.8% 24.9%
4973347 515.1.1.4 ↗ alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 0.75 57.0 4.02e-01 83.1% 27.6%
4960168 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.74 58.0 4.17e-01 84.7% 30.3%
4949471 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.72 54.0 3.88e-01 83.1% 27.4%
4953182 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.71 52.0 3.68e-01 78.0% 26.1%
5005924 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.69 50.0 3.50e-01 78.0% 24.7%
D2 high residues 64-124
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.64 43.0 2.94e-01 70.5% 37.2%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.63 46.0 3.69e-01 96.7% 39.7%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 44.0 3.35e-01 95.1% 34.3%
2liyA00 2.20.25.390 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Stomagen 0.59 38.0 4.19e-01 70.5% 88.9%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.58 37.0 3.85e-01 88.5% 68.4%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 3.75e-01 86.9% 82.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 3.70e-01 83.6% 53.7%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 3.63e-01 85.2% 55.4%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.81e-01 88.5% 90.4%
1accA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.56 41.0 2.96e-01 80.3% 78.5%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.65e-01 86.9% 61.8%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 2.75e-01 80.3% 18.1%
3q31A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.56 46.0 3.12e-01 93.4% 31.4%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 2.99e-01 80.3% 35.4%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 35.0 3.84e-01 72.1% 84.8%
5hwtB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.53e-01 90.2% 58.2%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.54 40.0 4.32e-01 78.7% 100.0%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.65e-01 86.9% 60.2%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 33.0 3.73e-01 85.2% 97.3%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 42.0 3.52e-01 93.4% 47.8%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.21e-01 88.5% 45.9%
4mn5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.58e-01 90.2% 53.4%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.52 39.0 2.71e-01 83.6% 65.8%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.35e-01 88.5% 57.1%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.37e-01 90.2% 50.4%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 2.48e-01 85.2% 15.6%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.38e-01 90.2% 50.9%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 3.32e-01 90.2% 59.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 46.0 5.12e-01 78.7% 95.6%
3447043 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 38.0 4.79e-01 77.0% 100.0%
4512243 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.63 41.0 4.20e-01 95.1% 68.3%
3205743 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.63 51.0 4.10e-01 100.0% 45.8%
3739035 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 47.0 4.74e-01 82.0% 83.3%
4226251 375.1.1.252 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.62 45.0 4.54e-01 85.2% 78.3%
5028346 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 40.0 4.05e-01 77.0% 68.3%
4962274 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 4.35e-01 80.3% 95.6%
235820 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 45.0 3.75e-01 86.9% 82.5%
3967421 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 44.0 3.55e-01 86.9% 63.1%
4353391 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 45.0 2.62e-01 90.2% 12.2%
4370212 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 3.14e-01 90.2% 35.7%
4980673 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 3.70e-01 90.2% 67.3%
5034547 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 43.0 3.40e-01 88.5% 48.6%
4958869 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 42.0 3.69e-01 90.2% 75.2%
11077 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 39.0 3.12e-01 86.9% 35.0%
4939382 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 43.0 3.66e-01 90.2% 64.5%
3327314 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 2.78e-01 100.0% 34.6%
4960098 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 42.0 3.46e-01 86.9% 76.7%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 42.0 3.89e-01 90.2% 76.5%
4999616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 2.58e-01 86.9% 17.2%
5047587 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 41.0 3.42e-01 88.5% 55.2%
3174350 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.02e-01 83.6% 78.5%
5008034 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 40.0 3.32e-01 86.9% 71.2%
4957161 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 40.0 3.42e-01 86.9% 82.7%
4988999 605.1.1.352 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PAS 0.53 40.0 2.86e-01 88.5% 40.4%
4949167 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 2.88e-01 90.2% 30.0%
4980710 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 40.0 3.36e-01 86.9% 60.0%
5047125 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 2.72e-01 86.9% 23.5%
5046746 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 40.0 3.23e-01 90.2% 50.7%
None — 0.52 39.0 3.12e-01 85.2% 58.2%
3972571 223.1.1.111 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, PAS_9 0.52 39.0 2.69e-01 88.5% 27.8%
4980675 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.36e-01 90.2% 49.2%
3959244 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 41.0 3.68e-01 90.2% 64.4%
4960111 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 39.0 3.19e-01 86.9% 69.2%
4980711 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.21e-01 86.9% 70.4%
5062837 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 39.0 3.19e-01 85.2% 52.0%
4950561 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 38.0 3.23e-01 88.5% 54.4%
5068526 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.44e-01 86.9% 88.0%
None — 0.51 38.0 2.87e-01 88.5% 35.9%
4190111 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.51 42.0 2.81e-01 93.4% 50.4%
3971053 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 40.0 3.39e-01 90.2% 50.9%
3971144 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 39.0 3.10e-01 85.2% 68.5%
3417907 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.51 41.0 2.80e-01 93.4% 51.4%
4952183 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 40.0 3.42e-01 90.2% 56.2%
4973551 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 40.0 3.23e-01 90.2% 48.0%
4949933 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 39.0 2.60e-01 90.2% 19.6%
3210256 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 39.0 2.62e-01 93.4% 46.9%
4977587 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 40.0 3.27e-01 90.2% 49.2%
4096596 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 39.0 2.38e-01 90.2% 12.2%
3973842 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.50 42.0 3.19e-01 95.1% 78.4%