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OQ240256.1__WEU69548.1__X__00008

Bact-Vir

OQ240256.1__WEU69548.1__X__00008

Identity

Accession:
OQ240256 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 35.0 3.51e-01 76.5% 50.6%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 42.0 4.35e-01 87.7% 73.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.71e-01 90.1% 93.2%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 4.22e-01 81.5% 87.4%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.25e-01 87.7% 96.1%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.60 41.0 3.92e-01 91.4% 62.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.75e-01 87.7% 97.0%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.49e-01 91.4% 36.4%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 4.26e-01 87.7% 88.9%
2dhoA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 44.0 3.34e-01 84.0% 75.3%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.91e-01 84.0% 35.8%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 45.0 4.47e-01 82.7% 95.2%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.61e-01 91.4% 100.0%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.57 42.0 3.24e-01 79.0% 81.7%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.85e-01 100.0% 94.6%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 40.0 3.41e-01 74.1% 55.5%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.57 41.0 3.97e-01 76.5% 68.8%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.57 41.0 3.93e-01 75.3% 69.2%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 39.0 2.49e-01 84.0% 14.7%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.86e-01 84.0% 34.9%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.53e-01 86.4% 13.7%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.93e-01 87.7% 33.0%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.67e-01 85.2% 78.6%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.76e-01 82.7% 27.1%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.88e-01 84.0% 32.1%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.77e-01 79.0% 39.9%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.54 43.0 3.66e-01 86.4% 63.7%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.86e-01 88.9% 39.4%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.88e-01 87.7% 30.8%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.78e-01 86.4% 26.8%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 3.33e-01 90.1% 61.1%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 40.0 2.94e-01 81.5% 95.7%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.56e-01 82.7% 25.1%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.51 33.0 3.60e-01 79.0% 80.3%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.67e-01 88.9% 31.4%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 38.0 3.53e-01 84.0% 63.3%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 35.0 3.05e-01 71.6% 97.6%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386275 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.75 33.0 3.79e-01 95.1% 55.0%
1238059 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.70 44.0 2.87e-01 87.7% 16.5%
3243842 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 35.0 3.19e-01 72.8% 39.1%
3523446 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 47.0 4.48e-01 81.5% 95.0%
3957660 245.2.1.2 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › DUF2710 0.63 44.0 4.25e-01 76.5% 64.4%
3574630 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.62 52.0 4.45e-01 92.6% 76.2%
3604752 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.62 41.0 3.41e-01 75.3% 38.6%
3703118 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.61 41.0 3.84e-01 75.3% 56.0%
3359168 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.61 42.0 3.87e-01 76.5% 57.0%
3291448 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 3.90e-01 86.4% 61.1%
4047302 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 42.0 3.89e-01 91.4% 58.0%
4194016 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 41.0 4.57e-01 90.1% 89.2%
4343474 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 42.0 4.00e-01 91.4% 62.1%
4168230 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 42.0 3.98e-01 91.4% 62.1%
4145290 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 42.0 4.00e-01 91.4% 62.1%
3776456 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 43.0 4.29e-01 86.4% 72.6%
3279757 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 41.0 4.10e-01 100.0% 68.2%
3240107 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.59 48.0 3.02e-01 87.7% 32.2%
3278284 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.59 41.0 3.85e-01 91.4% 58.0%
3270645 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.59 42.0 2.76e-01 74.1% 30.6%
3960596 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.59 39.0 3.85e-01 87.7% 64.7%
3660003 5.1.10.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.58 41.0 4.22e-01 74.1% 97.5%
3183857 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 45.0 4.14e-01 85.2% 71.8%
5055261 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.82e-01 87.7% 20.7%
3277064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 3.24e-01 86.4% 35.9%
4263801 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 43.0 2.49e-01 79.0% 16.2%
4472467 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 38.0 3.74e-01 87.7% 64.7%
4043859 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 41.0 3.82e-01 75.3% 64.0%
4026604 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.57 40.0 3.62e-01 82.7% 53.6%
3329380 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 38.0 3.35e-01 80.2% 47.8%
4124819 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 39.0 3.88e-01 90.1% 68.2%
3291668 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 41.0 4.03e-01 76.5% 70.0%
3831586 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.57 43.0 3.14e-01 80.2% 49.3%
4139864 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 41.0 3.84e-01 75.3% 64.3%
4987392 2002.1.1.57 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.56 42.0 2.79e-01 80.2% 41.4%
3290578 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.56 41.0 3.82e-01 76.5% 64.0%
3288416 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.56 40.0 3.69e-01 75.3% 60.0%
3289657 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.56 41.0 4.07e-01 76.5% 74.1%
4197141 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.56 40.0 3.75e-01 75.3% 62.0%
3790399 5.1.5.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.56 45.0 2.79e-01 88.9% 22.2%
3639565 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.86e-01 87.7% 24.6%
4067487 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.55 40.0 3.85e-01 76.5% 67.4%
3962103 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.55 40.0 3.70e-01 76.5% 60.0%
3593185 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 46.0 3.00e-01 88.9% 25.8%
3642552 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.04e-01 87.7% 31.2%
3403497 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.55 46.0 2.87e-01 90.1% 24.6%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.55 45.0 2.84e-01 87.7% 22.8%
None 0.55 45.0 2.96e-01 87.7% 30.8%
3371104 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 3.16e-01 87.7% 43.5%
3233883 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.54 45.0 2.89e-01 90.1% 25.7%
None 0.54 44.0 2.87e-01 87.7% 27.0%
3857554 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.81e-01 88.9% 23.8%
None 0.54 45.0 2.81e-01 88.9% 22.8%
None 0.54 48.0 3.16e-01 100.0% 68.3%
None 0.54 45.0 2.80e-01 88.9% 25.9%
3589881 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.54 39.0 3.73e-01 76.5% 69.5%
3782417 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.53 44.0 3.47e-01 93.8% 76.2%
3993681 5.1.4.362 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_VPS8 0.53 44.0 2.88e-01 88.9% 38.9%
3771074 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.98e-01 91.4% 90.2%
3271862 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.53 43.0 2.78e-01 88.9% 39.2%
3956669 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 42.0 3.37e-01 91.4% 65.6%
4594780 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.53 44.0 2.80e-01 88.9% 23.6%
4961461 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.53 44.0 2.78e-01 90.1% 26.3%
3388090 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.53 41.0 2.74e-01 82.7% 32.6%
3244141 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.53 43.0 2.74e-01 87.7% 21.4%
3585487 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 43.0 2.78e-01 88.9% 41.1%
3557192 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.52 43.0 2.75e-01 87.7% 26.8%
3576925 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.52 43.0 2.82e-01 90.1% 25.7%
3275416 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.52 43.0 2.77e-01 88.9% 27.8%
3795071 221.1.1.196 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › WD40 0.52 43.0 2.74e-01 88.9% 40.0%
3626667 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.52 43.0 2.71e-01 88.9% 26.5%
3232146 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.82e-01 88.9% 25.0%
5055345 5.1.5.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ACSF4 0.52 43.0 2.76e-01 88.9% 32.5%
3472821 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 42.0 2.64e-01 87.7% 29.1%
4988629 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.93e-01 91.4% 91.2%
5024072 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 4.04e-01 98.8% 99.0%
3787812 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.68e-01 91.4% 20.0%