Back to structures

OQ240257.1__WEU69621.1__X__00060

Bact-Vir

OQ240257.1__WEU69621.1__X__00060

Identity

Accession:
OQ240257 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-123
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 6.69e-01 98.4% 89.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.78 66.0 6.83e-01 95.3% 98.3%
1dc1A01 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.76 55.0 3.78e-01 100.0% 22.5%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.71 60.0 4.12e-01 100.0% 33.3%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 59.0 3.74e-01 100.0% 33.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.68 59.0 5.81e-01 96.9% 97.0%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 6.00e-01 98.4% 98.4%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.65 55.0 4.49e-01 100.0% 85.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 47.0 4.74e-01 81.2% 93.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.77e-01 100.0% 91.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.19e-01 87.5% 60.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 44.0 4.30e-01 81.2% 81.7%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.92e-01 98.4% 89.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 43.0 4.66e-01 84.4% 100.0%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 48.0 4.18e-01 96.9% 99.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 49.0 3.25e-01 100.0% 41.2%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 4.02e-01 98.4% 57.4%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.72e-01 87.5% 83.9%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.29e-01 93.8% 81.9%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 41.0 4.11e-01 79.7% 83.6%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.64e-01 89.1% 76.2%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 46.0 3.79e-01 96.9% 94.5%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 3.86e-01 98.4% 53.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.98e-01 92.2% 98.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.36e-01 87.5% 95.5%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.20e-01 93.8% 74.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 3.59e-01 96.9% 95.2%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 38.0 3.82e-01 79.7% 72.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.10e-01 98.4% 73.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.53 38.0 3.58e-01 78.1% 91.7%
1vomA01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 46.0 2.95e-01 100.0% 56.8%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.81e-01 96.9% 75.9%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.38e-01 100.0% 84.7%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.37e-01 95.3% 86.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.72e-01 81.2% 77.6%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.52 38.0 3.36e-01 98.4% 50.0%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.05e-01 81.2% 66.7%
2zuoA06 2.30.30.560 Mainly Beta › Roll › SH3 type barrels. › Major vault protein, N-terminal structural repeat domain 0.52 37.0 3.95e-01 93.8% 98.0%
4ipuA00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.51 40.0 3.27e-01 90.6% 78.8%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 43.0 3.57e-01 98.4% 88.6%
2hu9A01 2.20.25.270 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 37.0 3.83e-01 79.7% 83.6%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 42.0 3.30e-01 100.0% 44.7%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 41.0 3.44e-01 100.0% 71.2%
2e0nB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 42.0 3.61e-01 100.0% 66.1%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 85.0 8.21e-01 100.0% 92.9%
3587629 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 75.0 7.55e-01 95.3% 95.4%
4284778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 66.0 6.27e-01 96.9% 90.7%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.99e-01 98.4% 85.9%
4596087 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 65.0 6.14e-01 96.9% 97.3%
4004815 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.72 63.0 5.13e-01 100.0% 63.4%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.77e-01 98.4% 85.9%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.58e-01 96.9% 86.7%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.71 64.0 6.06e-01 100.0% 89.3%
5030093 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.71 61.0 5.88e-01 100.0% 89.3%
4980977 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.70 61.0 5.73e-01 100.0% 85.0%
3363751 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.70 60.0 5.12e-01 96.9% 88.6%
5046498 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.70 58.0 4.41e-01 96.9% 46.1%
3241067 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.98e-01 96.9% 61.8%
4070469 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.69 57.0 5.52e-01 95.3% 85.3%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 58.0 5.40e-01 98.4% 92.9%
5035935 219.1.1.26 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin 0.68 59.0 4.32e-01 100.0% 46.5%
4988761 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.68 60.0 5.38e-01 100.0% 90.0%
5041801 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.68 59.0 5.40e-01 100.0% 85.9%
5064548 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.68 48.0 5.18e-01 96.9% 92.5%
4961940 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.68 59.0 5.06e-01 100.0% 85.7%
5042087 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.67 58.0 5.60e-01 100.0% 90.7%
4982722 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.67 58.0 5.32e-01 100.0% 90.6%
5010832 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.67 58.0 5.25e-01 100.0% 92.1%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.67 56.0 5.12e-01 98.4% 90.0%
4964819 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.66 57.0 4.87e-01 100.0% 85.5%
4319097 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.37e-01 96.9% 96.6%
150293 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 57.0 5.01e-01 100.0% 84.4%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 57.0 5.13e-01 100.0% 88.9%
5061293 219.1.1.77 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.65 56.0 3.92e-01 98.4% 37.7%
3927795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.46e-01 92.2% 100.0%
4962778 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 54.0 4.80e-01 100.0% 90.9%
4937587 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 55.0 4.14e-01 100.0% 47.9%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.51e-01 98.4% 100.0%
5043132 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 54.0 4.98e-01 100.0% 91.8%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.94e-01 79.7% 100.0%
4992755 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.63 52.0 4.82e-01 100.0% 85.6%
2700914 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 47.0 4.34e-01 79.7% 63.7%
5042597 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.62 51.0 4.76e-01 100.0% 86.7%
4952973 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.62 51.0 4.72e-01 100.0% 91.1%
4234527 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.62 55.0 3.60e-01 100.0% 28.5%
4956695 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.62 53.0 4.99e-01 100.0% 97.5%
3603402 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.61 52.0 4.75e-01 100.0% 85.6%
4073610 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.61 54.0 4.45e-01 100.0% 67.0%
5002155 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 51.0 4.54e-01 100.0% 69.0%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.61 53.0 5.09e-01 100.0% 86.7%
3846046 221.1.1.195 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N 0.60 41.0 4.15e-01 78.1% 70.8%
3875439 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 4.04e-01 96.9% 60.0%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.47e-01 96.9% 85.1%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 49.0 4.61e-01 98.4% 76.2%
2784372 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.57 44.0 4.46e-01 87.5% 85.7%
3794450 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.57 47.0 3.72e-01 98.4% 63.9%
5012680 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.57 47.0 3.97e-01 92.2% 81.8%
1063090 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 47.0 3.82e-01 98.4% 81.3%
3805340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 47.0 3.87e-01 98.4% 86.9%
3236373 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.56 47.0 3.20e-01 100.0% 62.2%
3286800 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.64e-01 84.4% 95.2%
4353266 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.55 35.0 3.36e-01 78.1% 54.1%
4998579 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 2.81e-01 79.7% 50.3%
3989070 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 45.0 3.19e-01 100.0% 35.8%
3587815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 38.0 3.31e-01 81.2% 74.3%
5076800 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 2.79e-01 96.9% 27.1%
3244649 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.50 40.0 3.69e-01 93.8% 67.1%