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OQ240258.1__WEU69636.1__X__00015

Bact-Vir

OQ240258.1__WEU69636.1__X__00015

Identity

Accession:
OQ240258 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latilactobacillus_phage_TMW_1.1381_P1

TaxID: 3027587

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-118
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.80 56.0 5.40e-01 71.4% 100.0%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 64.0 6.63e-01 100.0% 98.0%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.73 52.0 4.41e-01 73.3% 60.7%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 55.0 4.42e-01 81.9% 50.7%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 38.0 2.94e-01 70.5% 70.9%
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 38.0 3.32e-01 72.4% 55.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2627023 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 54.0 5.64e-01 70.5% 72.2%
D2 high residues 158-250
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18667.8 best BppU_IgG 99.0 1.60e-28 100.0% 92.9%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.89 82.0 7.89e-01 100.0% 86.7%
2j1aA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 43.0 3.71e-01 100.0% 43.3%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.66 41.0 4.96e-01 82.8% 100.0%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 40.0 3.58e-01 100.0% 43.4%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 43.0 3.94e-01 100.0% 52.5%
2gmlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.63 41.0 4.53e-01 100.0% 83.8%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 37.0 4.32e-01 100.0% 87.1%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 42.0 4.84e-01 82.8% 100.0%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 41.0 4.69e-01 82.8% 100.0%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 41.0 3.54e-01 100.0% 45.3%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.59 33.0 2.91e-01 98.9% 36.0%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.58 40.0 3.45e-01 100.0% 43.7%
2ofqA01 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 3.93e-01 92.5% 69.7%
1kfwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 38.0 4.41e-01 83.9% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 38.0 4.05e-01 100.0% 79.7%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 41.0 4.62e-01 82.8% 100.0%
7wsoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 4.49e-01 94.6% 89.4%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 39.0 4.45e-01 81.7% 100.0%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.55 46.0 4.03e-01 92.5% 75.9%
7d9cA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.03e-01 92.5% 83.7%
1r17A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.54e-01 100.0% 49.4%
3kg5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.21e-01 94.6% 79.6%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.11e-01 93.5% 81.0%
2w38A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 47.0 4.55e-01 100.0% 86.5%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.37e-01 92.5% 87.0%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 4.03e-01 94.6% 66.9%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 37.0 3.04e-01 88.2% 37.4%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.07e-01 92.5% 82.5%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 4.19e-01 100.0% 91.7%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 4.08e-01 100.0% 79.3%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.51 42.0 3.84e-01 93.5% 78.6%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.84e-01 94.6% 85.4%
4kc3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.02e-01 94.6% 83.2%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.23e-01 100.0% 54.5%
4jfhE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 4.03e-01 94.6% 82.6%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.97e-01 92.5% 82.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1723263 11.27.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C-terminal Ig-like domain in baseplate protein ORF48 › C-terminal Ig-like domain in baseplate protein ORF48 › BppU_IgG 0.91 84.0 7.35e-01 100.0% 69.8%
3876114 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 48.0 4.05e-01 100.0% 48.0%
3523254 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.64 47.0 3.76e-01 100.0% 40.0%
3684935 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.39e-01 93.5% 65.0%
3324862 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.60 52.0 4.83e-01 94.6% 79.1%
1849 11.1.5.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C 0.59 49.0 3.83e-01 100.0% 43.5%
4038352 10.32.1.273 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29775 0.59 36.0 3.37e-01 100.0% 47.8%
4973722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.90e-01 94.6% 86.7%
4991164 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.60e-01 100.0% 85.6%
3966724 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 44.0 4.38e-01 100.0% 80.0%
4995896 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.11e-01 100.0% 61.5%
3632354 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.73e-01 93.5% 87.8%
5013968 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 36.0 3.54e-01 100.0% 58.2%
4575757 12.1.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C 0.57 38.0 3.64e-01 98.9% 57.3%
5055500 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 37.0 4.01e-01 100.0% 81.3%
3616214 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.57 48.0 4.48e-01 92.5% 80.0%
3731972 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 48.0 4.27e-01 100.0% 65.4%
5003240 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 40.0 3.39e-01 100.0% 45.0%
3476805 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.24e-01 94.6% 85.4%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 4.05e-01 95.7% 77.8%
4029608 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 34.0 3.25e-01 100.0% 52.7%
1806542 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.54 43.0 3.74e-01 100.0% 52.9%
3385895 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 39.0 4.12e-01 100.0% 87.5%
3893621 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 45.0 4.22e-01 93.5% 78.3%
4001295 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.54 43.0 2.90e-01 86.0% 95.0%
3703952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.45e-01 94.6% 80.9%
3578425 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.54 43.0 2.86e-01 86.0% 95.3%
3277267 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.40e-01 94.6% 84.5%
4287778 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.53 41.0 4.19e-01 89.2% 84.4%
2418866 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.53 47.0 4.40e-01 100.0% 79.6%
3242642 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.95e-01 90.3% 83.5%
3696965 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 42.0 3.50e-01 89.2% 90.0%
2156908 11.1.4.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa2 0.53 45.0 3.94e-01 94.6% 62.7%
5003841 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 3.98e-01 100.0% 73.6%
3721847 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 41.0 2.57e-01 87.1% 95.4%
185449 3342.1.1.1 ↗ beta sandwiches › C-terminal domain in a putative lipoprotein BACOVA_00967 › C-terminal domain in a putative lipoprotein BACOVA_00967 › C-terminal domain in a putative lipoprotein BACOVA_00967 › DUF4842 0.52 41.0 2.94e-01 88.2% 84.3%
4266111 11.1.5.107 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Candida_ALS_N 0.51 35.0 2.96e-01 100.0% 41.9%
4949410 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 4.12e-01 92.5% 81.9%
4122460 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.93e-01 97.8% 80.0%
4120726 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.50 31.0 3.14e-01 86.0% 63.3%
D3 medium residues 122-153
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u04A03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 52.0 3.28e-01 100.0% 86.5%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 43.0 2.91e-01 93.8% 20.5%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.09e-01 90.6% 53.2%
1ajqB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 38.0 2.31e-01 96.9% 38.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032421 1087.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein 0.87 73.0 4.92e-01 93.8% 27.3%
2593022 1087.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein › N-terminal domain of Phi ETA orf 56-like protein 0.87 75.0 4.83e-01 100.0% 22.7%
3218020 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 50.0 3.89e-01 87.5% 40.0%
3380817 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 40.0 3.85e-01 90.6% 53.8%
4285299 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.58 45.0 3.42e-01 87.5% 57.5%
5002473 107.1.1.9 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrome_CBB3 0.58 47.0 3.16e-01 93.8% 91.4%
3695897 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.57 45.0 2.56e-01 100.0% 14.1%