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OQ240260.1WCZ55025.1X__00046

Bact-Vir

OQ240260.1__WCZ55025.1__X__00046

Identity

Accession:: OQ240260 ↗
Kingdom:: phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latilactobacillus_phage_TMW_1.2272_P1

TaxID: 3027589

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ko6A00	1.10.1580.20	Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040	0.70	48.0	4.38e-01	79.1%	53.9%
4eqyA02	1.20.1180.10	Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	0.65	41.0	4.12e-01	79.1%	62.9%
2v9kA01	1.10.10.2050	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.63	43.0	4.72e-01	85.1%	98.0%
2dn0A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.58	40.0	3.92e-01	100.0%	65.8%
4izbB02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.58	35.0	4.12e-01	91.0%	95.3%
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.56	36.0	3.73e-01	82.1%	69.4%
3rrkA02	1.20.1460.20	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 ›	0.56	38.0	2.96e-01	71.6%	36.1%
3hl6A02	1.20.58.700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	45.0	3.88e-01	95.5%	78.3%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.54	31.0	3.02e-01	80.6%	48.1%
4uw9A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.54	44.0	4.12e-01	92.5%	84.3%
5d8cA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.52	37.0	3.09e-01	76.1%	65.1%
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	33.0	3.26e-01	100.0%	59.2%
2b8iA00	1.20.1280.100	Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain	0.50	38.0	3.73e-01	86.6%	85.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3236431	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.69	41.0	4.13e-01	76.1%	57.1%
3234685	3065.1.1.1 ↗	alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd	0.65	46.0	3.73e-01	97.0%	40.8%
3731112	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.60	42.0	4.43e-01	92.5%	83.3%
3196469	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	51.0	4.13e-01	98.5%	93.1%
3952621	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.58	41.0	4.06e-01	91.0%	72.5%
3672635	101.1.1.295 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_70	0.57	40.0	3.95e-01	95.5%	68.0%
4201679	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.57	41.0	3.85e-01	100.0%	61.2%
4124450	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.56	40.0	3.99e-01	91.0%	73.5%
4928130	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.56	45.0	4.11e-01	89.6%	96.7%
3603904	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.55	41.0	3.76e-01	82.1%	86.7%
3652032	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.54	37.0	3.64e-01	97.0%	64.0%
3421770	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	34.0	2.51e-01	92.5%	23.8%
4932388	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.53	38.0	3.75e-01	86.6%	68.0%
4998572	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	38.0	3.55e-01	77.6%	100.0%
5055834	3009.2.1.0 ↗	alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain	0.53	38.0	3.62e-01	76.1%	81.2%
3903736	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.51	35.0	3.56e-01	100.0%	72.9%
4964648	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.51	42.0	3.04e-01	100.0%	66.8%

D2 high residues 81-164

PDB

Domain cluster: rep: MK448875.1__QBX24825.1__Javan210_0040__00040__D57-128

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06854.17 best	Phage_Gp15	61.8	1.40e-16	90.5%	41.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kqfC00	1.20.950.20	Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C	0.55	43.0	3.17e-01	83.3%	41.2%
4crwA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	42.0	3.18e-01	88.1%	86.7%
7mqzA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	36.0	2.79e-01	72.6%	72.3%
2c5zA00	1.10.1740.100	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain	0.51	32.0	3.17e-01	81.0%	57.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4058341	7071.1.1.0 ↗		0.52	42.0	2.94e-01	90.5%	46.1%