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OQ259508.1__WDS60538.1__BC6_00023__00023

Bact-Vir

OQ259508.1__WDS60538.1__BC6_00023__00023

Identity

Accession:
OQ259508 ↗
Kingdom:
phage

Quality

60.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-118
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.75 59.0 4.92e-01 83.3% 50.8%
3w9iA06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.67 48.0 4.24e-01 75.0% 61.8%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 4.34e-01 76.4% 59.6%
8f4rA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.66 45.0 4.12e-01 72.2% 63.5%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 53.0 3.80e-01 90.3% 86.2%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.64 51.0 3.56e-01 90.3% 44.3%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.63 45.0 4.01e-01 75.0% 60.4%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 3.96e-01 76.4% 60.2%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.61 43.0 4.58e-01 75.0% 87.5%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 47.0 3.53e-01 88.9% 90.5%
2f8mA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 43.0 4.21e-01 77.8% 73.4%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 41.0 3.91e-01 75.0% 60.0%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.06e-01 83.3% 63.4%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.59 40.0 4.14e-01 75.0% 76.1%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.74e-01 75.0% 61.0%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.24e-01 75.0% 38.5%
4nmlA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 42.0 3.92e-01 77.8% 76.7%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 4.25e-01 91.7% 100.0%
4yzoC00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 47.0 3.03e-01 93.1% 88.5%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.57 43.0 3.75e-01 83.3% 93.9%
1uwkB01 3.40.1770.10 Alpha Beta › 3-Layer(aba) Sandwich › Urocanase fold › Urocanase superfamily 0.56 48.0 3.18e-01 100.0% 57.4%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.56 43.0 3.14e-01 83.3% 74.6%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 42.0 3.34e-01 81.9% 52.3%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 48.0 4.61e-01 100.0% 88.4%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.06e-01 76.4% 78.9%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 41.0 3.01e-01 80.6% 88.2%
4xnhC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.32e-01 84.7% 54.7%
7n7zA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 46.0 3.80e-01 95.8% 88.3%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.54e-01 83.3% 68.5%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.54 44.0 3.70e-01 95.8% 83.7%
3gkuA01 3.30.30.80 Alpha Beta › 2-Layer Sandwich › Defensin A-like › probable RNA-binding protein from clostridium symbiosum atcc 14940 0.54 37.0 4.11e-01 73.6% 98.1%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.60e-01 83.3% 62.7%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.54 45.0 3.33e-01 100.0% 46.0%
2w1kA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.54 46.0 3.39e-01 100.0% 70.7%
2e0zA01 3.30.2400.20 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.54 48.0 4.23e-01 100.0% 92.5%
3mnfA00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.54 41.0 3.02e-01 88.9% 68.1%
4ux7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.52 43.0 3.25e-01 97.2% 55.9%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.52 43.0 3.33e-01 100.0% 77.4%
4r9iA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.52 43.0 3.04e-01 98.6% 70.9%
4mn5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 3.86e-01 93.1% 100.0%
1ng5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.52 43.0 3.24e-01 98.6% 54.9%
7cijA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 40.0 2.72e-01 90.3% 87.5%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.52 36.0 3.45e-01 76.4% 62.4%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.34e-01 90.3% 69.0%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.52 39.0 3.46e-01 84.7% 85.0%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.12e-01 75.0% 89.3%
2xs2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 36.0 3.50e-01 87.5% 65.5%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 41.0 3.41e-01 97.2% 93.3%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.50 42.0 3.37e-01 100.0% 60.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052597 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 57.0 4.52e-01 83.3% 47.9%
4277614 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.72 56.0 4.86e-01 83.3% 55.5%
4574941 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.72 56.0 4.83e-01 83.3% 57.3%
4059572 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.70 54.0 4.67e-01 83.3% 53.6%
4963468 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 54.0 4.88e-01 83.3% 63.0%
4064719 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.70 54.0 4.79e-01 83.3% 57.1%
4940452 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.70 54.0 4.64e-01 83.3% 52.2%
4945933 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.69 53.0 4.49e-01 83.3% 51.7%
3580171 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 44.0 4.04e-01 83.3% 49.5%
3667432 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 54.0 4.90e-01 84.7% 65.3%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.68 53.0 4.65e-01 83.3% 58.1%
3603235 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.68 52.0 4.69e-01 83.3% 60.0%
2792325 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.66 47.0 4.16e-01 75.0% 60.0%
4989036 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.66 47.0 4.40e-01 76.4% 60.0%
4848473 2003.1.5.202 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT, Methyltransf_25 0.66 54.0 4.03e-01 90.3% 91.8%
3652417 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.66 53.0 4.25e-01 88.9% 92.4%
3663444 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.65 46.0 3.92e-01 77.8% 44.0%
3604508 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.65 48.0 4.49e-01 79.2% 68.9%
4538250 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.65 49.0 4.05e-01 83.3% 48.9%
2502610 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.64 47.0 4.29e-01 79.2% 65.3%
5058881 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 45.0 2.90e-01 76.4% 22.1%
3538387 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.62 53.0 3.85e-01 100.0% 68.0%
5046705 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.62 51.0 4.53e-01 90.3% 98.1%
4027407 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.38e-01 100.0% 26.0%
2397654 304.5.1.5 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C 0.62 43.0 3.91e-01 75.0% 53.0%
5072475 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.62 55.0 3.48e-01 100.0% 99.7%
4344201 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.62 52.0 4.89e-01 95.8% 94.4%
3672064 314.1.1.4 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c 0.61 51.0 3.52e-01 94.4% 74.1%
3802659 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.60 48.0 4.32e-01 90.3% 76.2%
3957946 256.1.1.12 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › SOUL 0.60 42.0 3.96e-01 75.0% 72.2%
4997715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 43.0 3.31e-01 77.8% 49.4%
3952856 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 42.0 3.86e-01 76.4% 55.0%
4014965 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 41.0 3.74e-01 76.4% 53.0%
3459821 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 42.0 3.35e-01 76.4% 95.9%
4012647 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 50.0 3.25e-01 100.0% 27.7%
5003409 886.1.1.1 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › SOUL 0.58 45.0 3.55e-01 86.1% 100.0%
5000520 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 45.0 3.96e-01 87.5% 57.1%
3882395 864.1.1.8 a+b two layers › DLC › DLC › DLC › CEP76_C 0.58 50.0 4.14e-01 100.0% 88.9%
3201347 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 45.0 3.15e-01 90.3% 47.6%
3410856 11.2.1.38 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Bfc 0.57 41.0 3.21e-01 76.4% 94.8%
3617194 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.57 48.0 4.08e-01 100.0% 88.5%
3405939 11.2.1.113 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MAP10_N, Bfc 0.57 41.0 3.21e-01 76.4% 93.3%
3560217 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.56 48.0 3.12e-01 100.0% 25.1%
4997962 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.56 39.0 2.76e-01 75.0% 63.5%
3600281 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 41.0 3.18e-01 76.4% 96.8%
3176914 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.56 39.0 3.40e-01 75.0% 94.2%
3758929 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.56 47.0 3.99e-01 100.0% 90.8%
4027274 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.56 47.0 3.88e-01 100.0% 91.7%
3499933 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.56 47.0 4.00e-01 100.0% 88.5%
3308035 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 40.0 3.21e-01 76.4% 92.1%
3606930 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.55 42.0 3.78e-01 86.1% 78.9%
4997180 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 48.0 3.99e-01 100.0% 82.3%
146256 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.55 42.0 3.64e-01 83.3% 85.7%
3589952 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.55 46.0 3.53e-01 100.0% 56.2%
3646462 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 47.0 3.53e-01 98.6% 96.2%
4189433 223.1.1.81 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.54 45.0 3.35e-01 95.8% 61.0%
5079697 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.06e-01 83.3% 77.5%
3528314 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 37.0 3.34e-01 75.0% 50.5%
3449090 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 45.0 3.10e-01 98.6% 62.5%
6087 222.1.1.11 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF4442 0.53 44.0 3.48e-01 93.1% 72.5%
4308940 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 38.0 2.61e-01 81.9% 65.1%
2845596 304.61.1.1 a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem 0.51 40.0 2.97e-01 88.9% 61.2%
2856156 7581.1.1.15 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C_1 0.51 41.0 3.26e-01 94.4% 88.3%
2879064 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.50 41.0 3.46e-01 100.0% 74.5%