Back to structures

OQ259509.1__WDS60650.1__BC7_00053__00053

Bact-Vir

OQ259509.1__WDS60650.1__BC7_00053__00053

Identity

Accession:
OQ259509 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-92
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.68 54.0 3.71e-01 84.6% 84.6%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 55.0 4.56e-01 100.0% 76.9%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 55.0 4.44e-01 100.0% 68.6%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.27e-01 100.0% 63.1%
6kcvA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 53.0 3.94e-01 100.0% 70.5%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 3.57e-01 100.0% 51.3%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 37.0 3.95e-01 98.9% 73.8%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 42.0 3.36e-01 76.9% 80.6%
1o4yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 3.69e-01 100.0% 61.1%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 42.0 3.37e-01 78.0% 82.2%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.82e-01 100.0% 74.4%
4c1wA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.93e-01 100.0% 75.0%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.26e-01 100.0% 86.1%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.48e-01 100.0% 62.9%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.67e-01 100.0% 70.5%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 4.00e-01 100.0% 93.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 34.0 3.13e-01 89.0% 49.2%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.53e-01 100.0% 64.0%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.28e-01 100.0% 65.1%
3qcwA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.57e-01 100.0% 74.9%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.25e-01 100.0% 62.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266531 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.65 38.0 3.07e-01 72.5% 31.5%
3484477 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 40.0 4.51e-01 100.0% 88.6%
29879 10.1.1.74 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.61 55.0 3.82e-01 100.0% 64.9%
3892035 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.60 54.0 4.18e-01 100.0% 61.5%
3191595 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.59 54.0 3.95e-01 100.0% 57.1%
3553889 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.58 43.0 3.37e-01 78.0% 75.9%
3537454 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.58 39.0 3.17e-01 70.3% 83.9%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.26e-01 97.8% 88.6%
3809530 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.58 51.0 3.73e-01 100.0% 54.3%
3191269 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 38.0 4.26e-01 97.8% 88.6%
395586 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.57 52.0 3.92e-01 100.0% 65.4%
3720772 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 38.0 4.26e-01 98.9% 90.0%
3893892 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 45.0 4.77e-01 97.8% 98.8%
3226744 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.92e-01 100.0% 96.7%
3707311 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.56 50.0 3.77e-01 100.0% 59.1%
3917289 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 51.0 4.05e-01 100.0% 74.4%
3910338 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 51.0 4.13e-01 100.0% 77.6%
4015056 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 50.0 3.59e-01 100.0% 64.2%
3886721 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.81e-01 100.0% 95.6%
3239315 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 51.0 4.38e-01 100.0% 84.3%
3451281 71.1.1.12 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.55 48.0 3.40e-01 100.0% 85.7%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.53 39.0 3.15e-01 76.9% 80.0%
3277405 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.53 48.0 3.53e-01 100.0% 54.8%
4076328 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.52 46.0 3.46e-01 100.0% 58.3%
3993341 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 4.00e-01 80.2% 98.8%
None 0.50 40.0 2.79e-01 89.0% 79.1%
4408002 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.50 42.0 3.24e-01 92.3% 81.9%