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OQ259509.1__WDS60659.1__BC7_00062__00062

Bact-Vir

OQ259509.1__WDS60659.1__BC7_00062__00062

Identity

Accession:
OQ259509 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-90
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.71 51.0 4.58e-01 91.7% 55.3%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 45.0 4.57e-01 71.4% 72.8%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.65 49.0 5.21e-01 100.0% 94.4%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 4.22e-01 92.9% 67.1%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 41.0 4.50e-01 82.1% 84.8%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 48.0 4.32e-01 98.8% 61.2%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 31.0 3.65e-01 95.2% 70.2%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.49e-01 100.0% 79.5%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 45.0 4.29e-01 94.0% 67.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.60 39.0 4.27e-01 90.5% 81.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 45.0 3.94e-01 81.0% 83.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 41.0 4.25e-01 72.6% 84.0%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 43.0 3.84e-01 100.0% 53.1%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 38.0 4.33e-01 83.3% 96.6%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 50.0 4.30e-01 98.8% 96.3%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 42.0 4.03e-01 77.4% 89.6%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.85e-01 71.4% 67.0%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 44.0 4.39e-01 95.2% 80.7%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 37.0 3.76e-01 100.0% 66.7%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 50.0 4.17e-01 100.0% 68.9%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.56 32.0 3.06e-01 97.6% 43.7%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 40.0 3.93e-01 84.5% 68.1%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 50.0 4.08e-01 100.0% 79.4%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 48.0 4.13e-01 100.0% 71.8%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 3.26e-01 83.3% 83.9%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 34.0 3.60e-01 78.6% 70.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 41.0 3.35e-01 90.5% 41.9%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 46.0 4.14e-01 100.0% 94.4%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 42.0 3.64e-01 85.7% 78.4%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.54 42.0 3.98e-01 88.1% 86.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 30.0 3.33e-01 98.8% 71.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.53 38.0 3.57e-01 89.3% 58.6%
1ybeB01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.53 43.0 2.86e-01 92.9% 94.2%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 4.41e-01 95.2% 87.8%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 3.25e-01 78.6% 88.9%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 30.0 2.97e-01 88.1% 49.0%
8b6jb01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 42.0 3.32e-01 94.0% 76.6%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 43.0 3.30e-01 96.4% 74.0%
5mgyA00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.51 43.0 3.04e-01 98.8% 71.5%
2r7cA02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.51 40.0 3.37e-01 94.0% 47.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.59e-01 92.9% 64.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.91e-01 94.0% 87.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4649672 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.67 46.0 4.73e-01 83.3% 75.0%
3843541 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.66 48.0 4.37e-01 76.2% 59.1%
4020561 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.65 45.0 4.32e-01 72.6% 62.0%
3372798 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.65 46.0 4.61e-01 76.2% 72.9%
5077304 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.65 50.0 5.21e-01 100.0% 93.3%
3973554 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.65 44.0 4.35e-01 73.8% 67.0%
4987642 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.64 44.0 3.93e-01 71.4% 83.3%
2531310 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.64 45.0 4.06e-01 73.8% 54.2%
4997133 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.64 44.0 4.24e-01 71.4% 63.2%
3651874 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.64 46.0 4.36e-01 76.2% 65.0%
4155057 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.64 46.0 4.41e-01 94.0% 66.3%
3268586 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.63 44.0 4.20e-01 76.2% 61.0%
4372378 306.3.1.4 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.63 43.0 4.32e-01 70.2% 72.9%
4256317 375.1.1.38 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.63 36.0 4.29e-01 100.0% 85.5%
3300216 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.63 44.0 4.14e-01 73.8% 60.0%
3829402 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 43.0 4.44e-01 71.4% 78.8%
4026919 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.63 45.0 4.15e-01 76.2% 59.1%
3517813 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 44.0 4.34e-01 73.8% 72.7%
3494433 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 34.0 2.93e-01 88.1% 37.1%
4993850 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 47.0 4.55e-01 90.5% 72.6%
5000362 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 43.0 4.17e-01 72.6% 65.3%
3251044 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.62 46.0 3.81e-01 94.0% 43.5%
3171307 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 43.0 3.90e-01 72.6% 53.9%
4225320 306.3.1.4 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.62 42.0 3.97e-01 71.4% 59.0%
3177030 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 43.0 4.01e-01 73.8% 57.3%
1307482 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.61 48.0 4.35e-01 98.8% 62.3%
5051463 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.61 42.0 4.29e-01 70.2% 75.0%
5075416 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 48.0 4.44e-01 91.7% 65.5%
4580823 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.61 45.0 4.05e-01 94.0% 55.8%
3998431 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.60 42.0 3.93e-01 73.8% 58.2%
3365684 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.60 47.0 4.45e-01 95.2% 71.0%
3500307 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.60 43.0 3.96e-01 77.4% 56.5%
4518165 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 45.0 3.22e-01 84.5% 72.1%
5014681 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 38.0 3.84e-01 77.4% 65.9%
154618 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.58 40.0 4.01e-01 72.6% 83.3%
1693530 225.3.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.58 48.0 3.66e-01 100.0% 36.0%
4025104 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.58 39.0 4.02e-01 94.0% 72.5%
4500961 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 45.0 4.52e-01 92.9% 84.7%
4940816 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 39.0 3.79e-01 71.4% 86.3%
3972097 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.57 40.0 4.25e-01 86.9% 85.3%
4319496 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 32.0 3.55e-01 88.1% 68.6%
3826658 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 39.0 3.94e-01 72.6% 72.9%
5040564 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.56 48.0 3.78e-01 97.6% 49.2%
3987968 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 48.0 4.26e-01 100.0% 68.5%
5025590 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 44.0 3.99e-01 85.7% 83.5%
4979632 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 45.0 3.56e-01 91.7% 42.2%
4373762 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 46.0 4.15e-01 94.0% 66.7%
3589362 225.1.1.9 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_5 0.55 48.0 4.20e-01 100.0% 72.9%
3782612 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 47.0 3.92e-01 100.0% 61.3%
5039588 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.54 40.0 4.29e-01 96.4% 98.6%
4015844 5089.1.1.0 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains 0.54 47.0 3.50e-01 98.8% 85.3%
3621644 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 35.0 3.40e-01 79.8% 56.0%
4054900 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 47.0 3.85e-01 100.0% 65.2%
3521820 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 44.0 3.29e-01 96.4% 77.4%
None 0.52 43.0 3.30e-01 96.4% 80.9%
3484746 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.52 42.0 3.91e-01 90.5% 90.0%
5014721 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 40.0 3.84e-01 82.1% 74.7%
5011372 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.51 40.0 3.91e-01 100.0% 76.8%
3275398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.47e-01 86.9% 67.8%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 38.0 3.55e-01 92.9% 63.0%
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.50 44.0 4.10e-01 100.0% 78.2%
3967315 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 37.0 2.65e-01 84.5% 23.9%