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OQ267591.1__WDQ26425.1__phiKPNS3_00159__00158
Bact-VirOQ267591.1__WDQ26425.1__phiKPNS3_00159__00158
Identity
- Accession:
- OQ267591 ↗
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Slopekvirus›
Klebsiella_phage_phi_KPN_S3
TaxID: 3028472
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-58
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00350__D12-79
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mixA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 43.0 | 3.55e-01 | 75.5% | 33.3% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.65 | 45.0 | 2.94e-01 | 75.5% | 57.7% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 48.0 | 2.94e-01 | 83.7% | 28.8% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.63 | 41.0 | 3.66e-01 | 75.5% | 45.1% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 39.0 | 4.04e-01 | 75.5% | 68.2% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 39.0 | 3.10e-01 | 71.4% | 48.1% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 46.0 | 3.42e-01 | 100.0% | 84.7% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.55 | 46.0 | 3.14e-01 | 98.0% | 70.0% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 42.0 | 4.07e-01 | 100.0% | 76.8% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 39.0 | 2.49e-01 | 85.7% | 39.2% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.54 | 43.0 | 4.28e-01 | 98.0% | 100.0% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 35.0 | 3.84e-01 | 77.6% | 82.1% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.54 | 41.0 | 3.00e-01 | 93.9% | 49.1% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 41.0 | 3.20e-01 | 89.8% | 68.3% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 3.02e-01 | 95.9% | 46.2% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 41.0 | 3.46e-01 | 91.8% | 83.5% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 40.0 | 2.93e-01 | 81.6% | 96.1% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.32e-01 | 89.8% | 68.8% |
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.53 | 41.0 | 3.55e-01 | 100.0% | 71.1% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.53 | 43.0 | 3.62e-01 | 100.0% | 58.8% |
| 3h6qA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 45.0 | 3.16e-01 | 100.0% | 29.2% |
| 6iccA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 43.0 | 3.59e-01 | 91.8% | 82.6% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 42.0 | 3.17e-01 | 100.0% | 78.1% |
| 1nf3C00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 38.0 | 3.10e-01 | 91.8% | 58.5% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.36e-01 | 87.8% | 77.3% |
| 1kbaA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 34.0 | 3.19e-01 | 98.0% | 53.0% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.51 | 39.0 | 3.65e-01 | 98.0% | 79.2% |
| 2o8rB02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.51 | 39.0 | 2.91e-01 | 91.8% | 55.5% |
| 4z24A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 2.44e-01 | 93.9% | 77.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3343242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 50.0 | 5.53e-01 | 100.0% | 82.5% |
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.75 | 54.0 | 5.39e-01 | 100.0% | 74.0% |
| 1933336 | 375.1.1.50 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 | 0.73 | 50.0 | 5.30e-01 | 100.0% | 81.4% |
| 3461850 | 150.1.1.88 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon | 0.73 | 63.0 | 4.39e-01 | 100.0% | 29.7% |
| 5034626 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 46.0 | 4.96e-01 | 100.0% | 82.5% |
| 4582514 | 375.1.1.50 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 | 0.70 | 48.0 | 5.24e-01 | 100.0% | 87.5% |
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 52.0 | 5.36e-01 | 100.0% | 93.3% |
| 5045117 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 51.0 | 4.74e-01 | 100.0% | 63.3% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.69 | 46.0 | 4.33e-01 | 71.4% | 55.9% |
| 3447043 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 45.0 | 5.04e-01 | 73.5% | 97.1% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.65 | 57.0 | 4.08e-01 | 100.0% | 32.7% |
| 3002315 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 44.0 | 4.00e-01 | 79.6% | 51.4% |
| 4951973 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 42.0 | 4.14e-01 | 100.0% | 61.8% |
| 3683817 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.63 | 44.0 | 2.67e-01 | 73.5% | 21.3% |
| 4965882 | 375.1.1.344 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7836 | 0.63 | 46.0 | 4.55e-01 | 100.0% | 74.1% |
| 3751411 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.63 | 50.0 | 4.22e-01 | 93.9% | 56.7% |
| 4505972 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.63 | 42.0 | 2.59e-01 | 71.4% | 49.1% |
| 3733469 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.62 | 54.0 | 3.87e-01 | 100.0% | 34.5% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.62 | 53.0 | 4.75e-01 | 100.0% | 68.6% |
| 3591242 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.61 | 46.0 | 3.47e-01 | 100.0% | 32.8% |
| 3504365 | 633.23.1.38 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM127 | 0.61 | 49.0 | 3.19e-01 | 91.8% | 19.6% |
| 5046254 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 43.0 | 4.47e-01 | 100.0% | 84.4% |
| 3497893 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 47.0 | 3.96e-01 | 100.0% | 47.4% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.60 | 50.0 | 4.57e-01 | 100.0% | 70.0% |
| 3867421 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 52.0 | 3.28e-01 | 100.0% | 21.6% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.59 | 45.0 | 2.60e-01 | 87.8% | 9.7% |
| 5028346 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 41.0 | 4.00e-01 | 95.9% | 66.7% |
| 4944869 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 47.0 | 3.47e-01 | 93.9% | 60.0% |
| 3618003 | 389.1.1.112 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137 | 0.56 | 38.0 | 3.72e-01 | 71.4% | 76.4% |
| 3609014 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.56 | 37.0 | 2.51e-01 | 79.6% | 14.8% |
| 3986836 | 375.1.1.253 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 | 0.55 | 41.0 | 4.07e-01 | 89.8% | 96.4% |
| 4962280 | 375.1.1.347 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 | 0.55 | 40.0 | 4.14e-01 | 100.0% | 91.1% |
| 3452042 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.55 | 42.0 | 4.10e-01 | 100.0% | 78.2% |
| 5005105 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 40.0 | 3.32e-01 | 79.6% | 84.4% |
| 4009252 | 3371.1.1.2 ↗ | few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 | 0.55 | 43.0 | 4.31e-01 | 100.0% | 96.0% |
| 5049449 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 41.0 | 4.11e-01 | 100.0% | 86.0% |
| 3574338 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.54 | 43.0 | 2.81e-01 | 91.8% | 64.3% |
| 5050980 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 41.0 | 4.11e-01 | 100.0% | 90.0% |
| 4997007 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 47.0 | 4.20e-01 | 100.0% | 88.6% |
| 3526482 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.54 | 43.0 | 3.44e-01 | 91.8% | 54.3% |
| 3458138 | 375.1.1.131 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 | 0.53 | 43.0 | 4.04e-01 | 100.0% | 90.8% |
| 5071179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.62e-01 | 100.0% | 66.7% |
| 5029082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 41.0 | 3.07e-01 | 100.0% | 83.5% |
| 2673846 | 3167.1.1.1 ↗ | a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e | 0.53 | 42.0 | 3.69e-01 | 98.0% | 68.7% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 45.0 | 4.41e-01 | 100.0% | 90.9% |