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OQ267593.1__WDQ26615.1__phiKPNH21_00002__00002

Bact-Vir

OQ267593.1__WDQ26615.1__phiKPNH21_00002__00002

Identity

Accession:
OQ267593 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 66.0 6.38e-01 100.0% 82.0%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 68.0 6.26e-01 100.0% 72.9%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 66.0 6.39e-01 100.0% 85.0%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 63.0 6.45e-01 98.1% 96.1%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.77 63.0 5.02e-01 100.0% 44.3%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 62.0 5.75e-01 98.1% 71.4%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 62.0 5.80e-01 100.0% 74.6%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 64.0 6.00e-01 100.0% 83.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.80e-01 75.9% 100.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 47.0 3.50e-01 88.9% 53.8%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 43.0 3.32e-01 88.9% 65.7%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.54 33.0 3.13e-01 90.7% 50.0%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.51 40.0 3.90e-01 100.0% 79.7%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 46.0 4.09e-01 100.0% 82.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031838 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.85 76.0 6.63e-01 100.0% 70.0%
3282671 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.83 72.0 6.43e-01 100.0% 69.9%
3587838 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 69.0 6.29e-01 100.0% 72.9%
3588951 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 67.0 6.46e-01 100.0% 83.3%
5013314 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 66.0 6.39e-01 100.0% 83.3%
4946761 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 68.0 6.32e-01 100.0% 81.4%
5030070 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 64.0 6.24e-01 100.0% 83.3%
4034164 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 67.0 5.13e-01 100.0% 57.6%
4034513 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 64.0 6.22e-01 100.0% 85.0%
1867991 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 65.0 5.75e-01 100.0% 91.3%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.33e-01 96.3% 65.0%
2325472 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.50 43.0 3.26e-01 98.1% 56.8%
D2 high residues 84-175
PDB
D3 medium residues 191-257
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 61.0 6.05e-01 100.0% 100.0%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 58.0 5.44e-01 97.0% 74.1%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 55.0 5.57e-01 98.5% 95.4%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 54.0 5.40e-01 98.5% 88.6%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 52.0 5.14e-01 98.5% 91.5%
3tmpA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 55.0 4.28e-01 100.0% 66.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 38.0 3.18e-01 77.6% 35.0%
3r1vA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.62 43.0 3.55e-01 73.1% 97.6%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 55.0 4.97e-01 100.0% 91.3%
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.61 43.0 4.12e-01 74.6% 66.3%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 30.0 3.25e-01 73.1% 55.9%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 52.0 3.98e-01 100.0% 96.5%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 53.0 4.06e-01 100.0% 62.0%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 43.0 3.57e-01 77.6% 40.6%
4lvpA00 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.60 49.0 4.21e-01 100.0% 70.2%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 40.0 3.82e-01 74.6% 64.2%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.57 42.0 3.14e-01 80.6% 87.6%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 49.0 4.61e-01 100.0% 81.0%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.56 46.0 3.94e-01 100.0% 92.0%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 35.0 3.62e-01 88.1% 67.2%
1gveB00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.55 47.0 3.09e-01 97.0% 97.0%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 41.0 3.81e-01 85.1% 83.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 4.03e-01 73.1% 92.9%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.53 45.0 3.53e-01 100.0% 71.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 39.0 3.91e-01 80.6% 92.5%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.53 38.0 3.40e-01 77.6% 92.9%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 45.0 3.40e-01 97.0% 70.9%
3nkeA00 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 43.0 3.17e-01 91.0% 49.2%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.51 45.0 4.15e-01 100.0% 82.8%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 36.0 3.65e-01 76.1% 100.0%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.50 42.0 3.88e-01 94.0% 100.0%
2o5rA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 41.0 3.80e-01 95.5% 69.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518133 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.72 61.0 5.78e-01 100.0% 87.1%
363971 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.71 60.0 5.61e-01 100.0% 86.0%
4400363 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.66 52.0 5.16e-01 94.0% 84.3%
3996596 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.66 46.0 4.62e-01 100.0% 71.4%
4070491 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.64 50.0 4.90e-01 89.6% 86.7%
4043422 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.64 49.0 4.79e-01 86.6% 82.7%
4237595 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.64 52.0 5.03e-01 95.5% 83.7%
4146098 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.63 49.0 4.77e-01 88.1% 84.0%
4661100 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.63 51.0 4.92e-01 95.5% 83.7%
4116870 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.63 49.0 4.71e-01 89.6% 86.3%
4632217 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.63 51.0 4.99e-01 94.0% 88.0%
3840704 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.63 54.0 3.94e-01 98.5% 38.3%
4031703 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.63 50.0 5.03e-01 98.5% 88.6%
4481619 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.62 48.0 4.82e-01 88.1% 88.6%
3341256 109.3.1.137 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF3490 0.62 48.0 4.99e-01 100.0% 96.7%
4139420 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.62 48.0 4.77e-01 88.1% 88.6%
4438215 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.62 52.0 4.97e-01 98.5% 86.3%
4027936 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.62 53.0 3.86e-01 100.0% 64.5%
4013639 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.61 38.0 3.02e-01 76.1% 30.7%
4636337 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.60 49.0 4.77e-01 94.0% 86.7%
3380614 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 41.0 2.37e-01 74.6% 8.5%
3908 545.1.1.1 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 › Pfg27 0.57 42.0 3.14e-01 80.6% 87.6%
4079594 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.57 44.0 4.38e-01 94.0% 88.0%
3765803 4156.1.1.2 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.56 37.0 2.76e-01 70.1% 44.4%
3607309 1189.1.1.2 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.55 47.0 3.03e-01 100.0% 91.0%
3590358 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.55 37.0 2.62e-01 70.1% 23.9%
3990846 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.36e-01 70.1% 62.2%
3283355 150.5.1.51 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 0.54 38.0 3.60e-01 76.1% 67.1%
4580243 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.54 34.0 3.14e-01 76.1% 47.8%
4308067 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 36.0 3.57e-01 70.1% 100.0%
3496665 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.53 37.0 2.95e-01 85.1% 34.5%
1316897 532.2.1.1 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.53 39.0 3.49e-01 80.6% 75.8%
3636971 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.52 37.0 3.11e-01 76.1% 42.5%
3957632 150.5.1.53 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.52 37.0 3.20e-01 76.1% 46.4%
3959687 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.52 37.0 3.27e-01 76.1% 77.8%
3404899 509.1.1.13 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.51 41.0 4.05e-01 95.5% 81.4%
3999776 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.51 35.0 2.89e-01 74.6% 39.2%
D4 medium residues 271-307
PDB