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OQ267696.1__WDE69808.1__VPHZ6_orf00025__00025

Bact-Vir

OQ267696.1__WDE69808.1__VPHZ6_orf00025__00025

Identity

Accession:
OQ267696 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VPHZ6

TaxID: 3028162

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-149
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 36.0 4.47e-01 77.3% 87.2%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 46.0 4.93e-01 94.5% 85.7%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 31.0 3.95e-01 78.1% 87.1%
2oqrA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.85e-01 98.4% 94.4%
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 48.0 3.77e-01 94.5% 50.0%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 49.0 4.63e-01 93.8% 78.9%
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.55 34.0 3.67e-01 85.9% 72.6%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.53 30.0 3.27e-01 71.1% 67.0%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 36.0 3.71e-01 82.0% 73.0%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 37.0 3.96e-01 97.7% 87.0%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 44.0 3.78e-01 96.1% 82.1%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 41.0 4.07e-01 85.9% 91.8%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.51 34.0 3.60e-01 96.9% 76.8%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 29.0 3.25e-01 87.5% 70.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057164 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 46.0 5.24e-01 78.1% 69.0%
5056734 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 49.0 5.15e-01 84.4% 67.0%
4943320 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 44.0 4.60e-01 97.7% 62.5%
4997662 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 42.0 4.60e-01 97.7% 65.5%
5041677 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 43.0 4.64e-01 97.7% 67.3%
3652068 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 50.0 4.88e-01 94.5% 75.4%
5044560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 58.0 4.69e-01 96.1% 83.9%
4028884 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 47.0 4.98e-01 96.9% 93.0%
3262268 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.59 48.0 4.40e-01 94.5% 67.9%
5055786 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.56 44.0 3.95e-01 83.6% 95.0%
4338112 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 49.0 4.64e-01 97.7% 93.5%
3978183 304.58.1.0 ↗ a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.53 40.0 3.15e-01 78.1% 93.5%
3480630 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.53 32.0 2.95e-01 74.2% 43.6%
3016706 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.53 39.0 4.32e-01 91.4% 98.0%
4425726 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.53 44.0 4.38e-01 92.2% 91.9%
5017738 563.2.1.0 ↗ alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like 0.52 34.0 3.45e-01 73.4% 65.4%
3630975 632.1.1.25 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Med15_fungi 0.50 37.0 3.76e-01 91.4% 78.4%
D2 medium residues 150-228
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 36.0 2.37e-01 72.2% 97.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006331 4168.1.1.1 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.57 38.0 4.10e-01 93.7% 83.1%
3273181 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.50 41.0 2.85e-01 89.9% 55.6%