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OQ267696.1__WDE69830.1__VPHZ6_orf00047__00047

Bact-Vir

OQ267696.1__WDE69830.1__VPHZ6_orf00047__00047

Identity

Accession:
OQ267696 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VPHZ6

TaxID: 3028162

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-193
PDB
Domain cluster: rep: MZ501264.1__QZA70128.1__274BB002_59__00058__D5-186
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16473.12 best Rv2179c-like 133.5 9.90e-39 94.7% 97.7%
D2 medium residues 194-253
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 56.0 4.31e-01 70.0% 33.3%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 60.0 4.83e-01 88.3% 45.5%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.76 66.0 4.62e-01 95.0% 31.5%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 48.0 4.18e-01 81.7% 49.0%
3kkdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 56.0 3.95e-01 100.0% 75.3%
2qm8A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.65 54.0 5.30e-01 96.7% 84.6%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 4.49e-01 76.7% 100.0%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 45.0 2.92e-01 83.3% 20.0%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 3.94e-01 86.7% 86.7%
4r70B03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 41.0 3.17e-01 75.0% 78.5%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.58 40.0 3.35e-01 73.3% 91.7%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 3.04e-01 85.0% 38.7%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.57 41.0 3.44e-01 78.3% 65.1%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.65e-01 91.7% 76.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288637 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.85 75.0 6.92e-01 95.0% 77.3%
3756047 192.29.1.243 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fy-3 0.79 67.0 5.87e-01 95.0% 67.8%
3399633 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 50.0 3.58e-01 73.3% 30.3%
1144728 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.63 48.0 4.19e-01 83.3% 53.2%
3884912 109.4.1.1276 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.60 44.0 3.33e-01 81.7% 48.8%
D3 medium residues 254-318
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 3.31e-01 89.2% 44.2%
1e6dM01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.52 42.0 3.20e-01 93.8% 39.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4242805 2007.13.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.58 40.0 2.78e-01 72.3% 74.8%
4410490 3961.1.1.0 ↗ 0.56 34.0 2.97e-01 78.5% 37.0%
4003121 377.1.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.55 31.0 3.48e-01 80.0% 72.9%
4313114 378.1.1.30 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.54 42.0 3.51e-01 87.7% 90.8%
3810170 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.54 35.0 2.55e-01 89.2% 24.4%
3629945 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 41.0 3.44e-01 86.2% 83.5%
3223233 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 44.0 3.07e-01 98.5% 97.4%
3987428 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.50 41.0 3.63e-01 92.3% 100.0%