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OQ267696.1__WDE69836.1__VPHZ6_orf00053__00053

Bact-Vir

OQ267696.1__WDE69836.1__VPHZ6_orf00053__00053

Identity

Accession:
OQ267696 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VPHZ6

TaxID: 3028162

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-49_120-158
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.52 40.0 3.54e-01 81.8% 64.5%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.51 39.0 3.31e-01 87.0% 95.1%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 39.0 2.51e-01 84.4% 82.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3321950 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.55 32.0 3.66e-01 77.9% 86.0%
3926009 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.53 39.0 3.72e-01 98.7% 65.3%
D2 medium residues 50-119
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zo4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 49.0 3.60e-01 85.7% 44.8%
2mjmA00 1.10.533.20 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › 0.59 48.0 4.33e-01 92.9% 81.2%
3o3mB01 1.20.1270.370 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.74e-01 97.1% 53.4%
4ojmX02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 40.0 3.54e-01 94.3% 53.3%
2kn6A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 45.0 4.34e-01 98.6% 89.0%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.53 45.0 3.23e-01 98.6% 95.1%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.25e-01 92.9% 78.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028109 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.63 51.0 5.23e-01 95.7% 100.0%
3506967 632.1.1.11 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › HYOU1_C 0.53 46.0 4.30e-01 98.6% 96.7%
3622037 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.52 36.0 3.11e-01 78.6% 43.5%
4648953 3860.1.1.130 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Yae1_N 0.52 45.0 3.90e-01 100.0% 67.8%
1137274 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.52 44.0 3.56e-01 100.0% 78.0%