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OQ267696.1__WDE69841.1__VPHZ6_orf00058__00058

Bact-Vir

OQ267696.1__WDE69841.1__VPHZ6_orf00058__00058

Identity

Accession:
OQ267696 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

TaxID: 3028162

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kutB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.76 45.0 3.82e-01 92.9% 37.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 65.0 5.04e-01 100.0% 67.0%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.69 58.0 5.81e-01 100.0% 96.6%
1jp4A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.68 58.0 4.16e-01 98.2% 97.1%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.66 62.0 4.71e-01 100.0% 65.8%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.66 54.0 4.11e-01 100.0% 100.0%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.65 55.0 4.26e-01 100.0% 42.2%
4iu9A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.64 56.0 3.35e-01 100.0% 29.8%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 47.0 3.41e-01 83.9% 43.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 4.58e-01 100.0% 81.7%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 46.0 3.11e-01 83.9% 25.0%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.01e-01 94.6% 51.0%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.34e-01 78.6% 45.2%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.59 41.0 3.46e-01 73.2% 82.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 50.0 4.17e-01 100.0% 58.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.33e-01 100.0% 91.4%
4kq9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 44.0 3.04e-01 82.1% 37.0%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 39.0 2.99e-01 71.4% 29.1%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 41.0 2.71e-01 76.8% 31.4%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.71e-01 100.0% 49.0%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.56 47.0 3.63e-01 100.0% 73.5%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.53e-01 98.2% 46.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.93e-01 98.2% 93.5%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.48e-01 100.0% 48.5%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.04e-01 100.0% 97.7%
1o7fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 3.45e-01 100.0% 79.5%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 44.0 2.70e-01 96.4% 97.9%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.54 44.0 3.44e-01 98.2% 62.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 38.0 3.86e-01 85.7% 78.9%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 46.0 3.30e-01 100.0% 34.4%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 45.0 2.77e-01 100.0% 15.3%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 3.84e-01 100.0% 64.8%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 45.0 3.86e-01 100.0% 68.1%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.52 40.0 3.37e-01 89.3% 62.0%
2gu0A02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.52 41.0 3.10e-01 91.1% 42.1%
5w1uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.54e-01 100.0% 33.2%
5k8bA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.08e-01 87.5% 91.7%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.61e-01 92.9% 58.1%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.55e-01 100.0% 72.7%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 2.82e-01 92.9% 85.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.51e-01 94.6% 80.2%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.28e-01 100.0% 71.3%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.69e-01 94.6% 71.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.56e-01 100.0% 70.4%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 3.58e-01 94.6% 58.8%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.50 43.0 3.36e-01 100.0% 77.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980132 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.86 77.0 7.84e-01 100.0% 100.0%
3786162 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 70.0 5.72e-01 100.0% 65.3%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 69.0 5.71e-01 100.0% 63.3%
3271834 109.4.1.816 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N 0.72 63.0 3.49e-01 100.0% 8.0%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 67.0 5.50e-01 100.0% 64.2%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 65.0 5.15e-01 100.0% 68.2%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 66.0 4.96e-01 100.0% 47.7%
3630462 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 64.0 4.74e-01 100.0% 43.6%
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 65.0 4.76e-01 100.0% 58.5%
3970671 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 60.0 5.42e-01 94.6% 76.0%
3097754 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.67 58.0 5.49e-01 92.9% 80.0%
3292464 4340.1.1.2 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C 0.66 33.0 3.42e-01 98.2% 49.1%
3394692 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.62e-01 100.0% 100.0%
5049696 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.65 54.0 3.69e-01 98.2% 82.7%
3881031 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.65 55.0 3.64e-01 100.0% 41.5%
4385210 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.65 58.0 3.99e-01 100.0% 80.5%
5071736 2004.1.1.277 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C 0.63 53.0 3.23e-01 100.0% 23.1%
4546696 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 47.0 4.02e-01 80.4% 95.6%
4665476 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.62 53.0 3.59e-01 98.2% 32.1%
4962681 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 50.0 4.25e-01 91.1% 86.3%
3400082 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.62 53.0 4.44e-01 100.0% 83.0%
4026547 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 53.0 3.32e-01 100.0% 21.6%
3969345 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.61 49.0 3.39e-01 96.4% 62.7%
4940513 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 44.0 3.71e-01 94.6% 47.8%
4961452 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.60 50.0 3.91e-01 94.6% 80.8%
4773815 4340.1.1.2 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C 0.59 34.0 3.34e-01 78.6% 45.2%
3598612 220.1.1.230 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.59 41.0 3.58e-01 98.2% 46.7%
4973217 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.45e-01 100.0% 92.9%
3630540 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.58 42.0 2.77e-01 80.4% 81.1%
3638065 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.57 51.0 3.83e-01 100.0% 73.3%
3886971 3704.1.1.0 alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain 0.57 39.0 2.85e-01 100.0% 24.0%
5029662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.97e-01 96.4% 77.0%
2320836 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.56 45.0 4.27e-01 91.1% 72.7%
3212403 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.56 50.0 3.22e-01 100.0% 78.8%
4929751 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.03e-01 92.9% 94.1%
4956595 3754.1.1.1 alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.56 48.0 3.02e-01 98.2% 54.9%
5020988 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 45.0 3.00e-01 89.3% 24.5%
4807860 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.55 46.0 3.09e-01 89.3% 51.3%
3873955 7016.1.1.0 extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain 0.55 45.0 3.42e-01 100.0% 61.3%
4203720 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.55 43.0 3.76e-01 92.9% 97.9%
3929962 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.55 47.0 3.04e-01 94.6% 82.0%
3489258 306.8.1.0 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like 0.55 46.0 3.84e-01 100.0% 76.2%
4943544 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 39.0 3.60e-01 75.0% 85.7%
5029366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 47.0 4.07e-01 96.4% 100.0%
4250998 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 44.0 3.80e-01 96.4% 98.9%
4974684 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.85e-01 100.0% 87.0%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.97e-01 92.9% 85.5%
2138587 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.53 43.0 2.53e-01 100.0% 92.7%
5071120 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 37.0 3.29e-01 75.0% 85.9%
5030252 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 43.0 3.74e-01 100.0% 87.0%
5074106 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 39.0 3.35e-01 82.1% 73.7%
5579 306.8.1.1 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.53 45.0 3.86e-01 100.0% 68.1%
4325095 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 43.0 3.05e-01 100.0% 63.7%
5069901 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.86e-01 96.4% 100.0%
4928469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.90e-01 96.4% 100.0%
5032275 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 41.0 3.55e-01 94.6% 83.0%
4967461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.67e-01 96.4% 81.1%
4966804 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.52 41.0 3.73e-01 96.4% 96.5%
4951675 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.51 42.0 3.60e-01 96.4% 78.0%
5046131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.12e-01 78.6% 78.0%
5013841 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 43.0 3.43e-01 100.0% 70.4%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 38.0 3.62e-01 100.0% 70.8%
4960070 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.67e-01 96.4% 98.9%