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OQ302138.1__WDS60823.1__X__00033
Bact-VirOQ302138.1__WDS60823.1__X__00033
Identity
- Accession:
- OQ302138 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Maculvirus›
Vibrio_phage_VP9
TaxID: 3025410
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.73 | 66.0 | 4.72e-01 | 98.5% | 38.5% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 51.0 | 5.34e-01 | 78.8% | 86.7% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 49.0 | 3.93e-01 | 75.8% | 87.1% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.68 | 55.0 | 4.27e-01 | 86.4% | 49.6% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 53.0 | 3.71e-01 | 83.3% | 78.4% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.67 | 51.0 | 4.32e-01 | 80.3% | 50.5% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 49.0 | 3.61e-01 | 80.3% | 40.3% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 48.0 | 3.48e-01 | 77.3% | 99.5% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.64 | 46.0 | 3.08e-01 | 77.3% | 88.4% |
| 2x12A01 | 2.60.40.2010 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 52.0 | 3.76e-01 | 89.4% | 99.5% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 55.0 | 3.41e-01 | 100.0% | 37.9% |
| 4irzA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.62 | 54.0 | 3.30e-01 | 100.0% | 59.4% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.61 | 44.0 | 2.98e-01 | 77.3% | 89.3% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 52.0 | 3.37e-01 | 100.0% | 40.9% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 47.0 | 4.11e-01 | 84.8% | 96.0% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 46.0 | 3.55e-01 | 86.4% | 34.8% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.60 | 51.0 | 4.01e-01 | 98.5% | 56.7% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.60 | 50.0 | 3.34e-01 | 98.5% | 50.0% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.59 | 42.0 | 3.74e-01 | 90.9% | 51.6% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.59 | 51.0 | 3.19e-01 | 100.0% | 43.8% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 51.0 | 3.38e-01 | 100.0% | 56.4% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.58 | 48.0 | 3.63e-01 | 92.4% | 42.5% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 42.0 | 2.86e-01 | 77.3% | 88.6% |
| 7jl1B01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.58 | 48.0 | 3.68e-01 | 90.9% | 73.5% |
| 3uaqB02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 50.0 | 3.78e-01 | 97.0% | 61.3% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 48.0 | 3.75e-01 | 98.5% | 88.4% |
| 3cxgA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 51.0 | 4.19e-01 | 100.0% | 89.3% |
| 1uypA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 48.0 | 3.25e-01 | 100.0% | 62.9% |
| 4g2sA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 48.0 | 4.18e-01 | 97.0% | 79.2% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 48.0 | 3.52e-01 | 100.0% | 78.4% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 40.0 | 2.83e-01 | 75.8% | 90.0% |
| 3lp8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 40.0 | 3.17e-01 | 74.2% | 79.7% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 40.0 | 3.37e-01 | 75.8% | 100.0% |
| 7xr9E01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 43.0 | 3.14e-01 | 84.8% | 78.7% |
| 6eugA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 46.0 | 3.05e-01 | 100.0% | 88.5% |
| 8cukB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.11e-01 | 100.0% | 41.3% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 48.0 | 3.66e-01 | 100.0% | 51.8% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.62e-01 | 93.9% | 60.4% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 46.0 | 3.52e-01 | 98.5% | 59.4% |
| 4hn7A00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 43.0 | 4.05e-01 | 93.9% | 96.5% |
| 4bhrA00 | 3.30.1300.70 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 37.0 | 3.53e-01 | 75.8% | 63.0% |
| 5m07A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 41.0 | 3.78e-01 | 87.9% | 98.9% |
| 4f2mE00 | 2.60.40.3130 | Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) | 0.51 | 36.0 | 2.86e-01 | 77.3% | 47.3% |
| 3anqD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 39.0 | 3.54e-01 | 87.9% | 86.6% |
| 3p0lD00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 42.0 | 3.05e-01 | 92.4% | 38.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029094 | 3257.1.1.0 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain | 0.76 | 60.0 | 4.26e-01 | 92.4% | 28.5% |
| 3604987 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.68 | 61.0 | 4.19e-01 | 100.0% | 52.9% |
| 3743439 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.68 | 59.0 | 4.31e-01 | 98.5% | 41.1% |
| 3455144 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.68 | 47.0 | 5.24e-01 | 75.8% | 96.0% |
| 3708068 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 55.0 | 3.74e-01 | 93.9% | 61.6% |
| 4981546 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 57.0 | 3.53e-01 | 100.0% | 43.6% |
| 3785319 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.65 | 46.0 | 4.32e-01 | 78.8% | 58.8% |
| 3386770 | 243.1.1.8 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC | 0.65 | 49.0 | 3.63e-01 | 80.3% | 81.8% |
| 3607725 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 57.0 | 3.56e-01 | 100.0% | 74.1% |
| 3892746 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.64 | 54.0 | 3.36e-01 | 93.9% | 37.9% |
| 3708150 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 56.0 | 3.52e-01 | 100.0% | 76.8% |
| 3466257 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.63 | 54.0 | 3.47e-01 | 100.0% | 67.2% |
| 3514681 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.63 | 50.0 | 5.18e-01 | 86.4% | 98.3% |
| 3404443 | 5.1.4.257 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 | 0.62 | 54.0 | 3.25e-01 | 100.0% | 38.4% |
| 3765061 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.62 | 53.0 | 3.26e-01 | 100.0% | 55.7% |
| 3486812 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.62 | 53.0 | 4.03e-01 | 95.5% | 100.0% |
| 3618164 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.62 | 53.0 | 3.10e-01 | 100.0% | 15.6% |
| 3915503 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 54.0 | 3.47e-01 | 100.0% | 55.8% |
| 3740435 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.61 | 52.0 | 3.36e-01 | 100.0% | 47.4% |
| 4946928 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.61 | 52.0 | 3.17e-01 | 95.5% | 28.4% |
| 3260335 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.61 | 53.0 | 3.32e-01 | 100.0% | 39.5% |
| 3979044 | 206.1.3.40 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD | 0.60 | 53.0 | 3.63e-01 | 98.5% | 37.4% |
| 3593021 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 51.0 | 4.10e-01 | 98.5% | 85.9% |
| 4963006 | 4.1.1.490 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26269 | 0.59 | 47.0 | 4.35e-01 | 97.0% | 68.2% |
| 3592051 | 5.1.4.91 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 | 0.59 | 50.0 | 3.12e-01 | 95.5% | 26.9% |
| 5042975 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 51.0 | 3.72e-01 | 100.0% | 68.7% |
| 3554160 | 5.1.4.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP | 0.59 | 51.0 | 3.30e-01 | 100.0% | 44.2% |
| 4015773 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 51.0 | 4.53e-01 | 100.0% | 78.0% |
| 3251953 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 39.0 | 4.44e-01 | 75.8% | 100.0% |
| 5008670 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 49.0 | 3.44e-01 | 100.0% | 56.0% |
| 3421020 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 50.0 | 3.55e-01 | 100.0% | 73.2% |
| 4927100 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 43.0 | 3.91e-01 | 89.4% | 58.9% |
| 3939750 | 5.1.4.55 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb | 0.57 | 47.0 | 2.91e-01 | 97.0% | 42.5% |
| 4145192 | 3180.1.1.0 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related | 0.57 | 48.0 | 4.19e-01 | 100.0% | 66.4% |
| 3499502 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 48.0 | 3.03e-01 | 100.0% | 46.1% |
| 3421782 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.57 | 49.0 | 3.37e-01 | 100.0% | 90.0% |
| 3446490 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.56 | 48.0 | 3.05e-01 | 100.0% | 42.1% |
| 3421076 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.55 | 46.0 | 3.11e-01 | 100.0% | 46.9% |
| 1115776 | 295.1.1.5 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly | 0.55 | 47.0 | 3.54e-01 | 100.0% | 47.3% |
| 3589527 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.54 | 45.0 | 2.98e-01 | 100.0% | 41.2% |
| 3806012 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 45.0 | 2.99e-01 | 100.0% | 39.3% |
| 3737890 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 44.0 | 2.96e-01 | 93.9% | 43.8% |
| 4981911 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 43.0 | 3.01e-01 | 90.9% | 35.8% |
| 3699727 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 2.92e-01 | 98.5% | 36.8% |
| 3827973 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.53 | 44.0 | 2.94e-01 | 100.0% | 37.8% |
| 3753738 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 43.0 | 2.73e-01 | 93.9% | 23.8% |
| 3441723 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 42.0 | 2.90e-01 | 100.0% | 60.4% |
| 3405863 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.51 | 42.0 | 2.75e-01 | 92.4% | 95.6% |
| 5037179 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.51 | 37.0 | 3.73e-01 | 77.3% | 96.9% |