←Back to structures
OQ302593.1__WDS60866.1__Simurgh_gp12c__00012
Bact-VirOQ302593.1__WDS60866.1__Simurgh_gp12c__00012
Identity
- Accession:
- OQ302593 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Rountreeviridae›
Rosenblumvirus›
Staphylococcus_phage_Simurgh
TaxID: 3028172
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 191-308
Domain cluster:
rep: MZ333134.1__QXG07748.1__X__00016__D390-489
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.79 | 65.0 | 6.83e-01 | 100.0% | 95.3% |
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.71 | 66.0 | 5.74e-01 | 100.0% | 96.6% |
| 7vt9A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.71 | 44.0 | 5.42e-01 | 99.2% | 100.0% |
| 4mtmA01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 53.0 | 5.82e-01 | 97.5% | 100.0% |
| 1m53A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 43.0 | 5.18e-01 | 100.0% | 97.4% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.68 | 61.0 | 5.95e-01 | 100.0% | 98.5% |
| 7jjtA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.67 | 46.0 | 5.15e-01 | 100.0% | 93.2% |
| 1uokA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 43.0 | 5.05e-01 | 100.0% | 97.4% |
| 3aj7A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 42.0 | 5.00e-01 | 100.0% | 97.4% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 42.0 | 4.92e-01 | 100.0% | 97.5% |
| 5zceA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 41.0 | 4.86e-01 | 100.0% | 97.4% |
| 4wz9A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.63 | 52.0 | 4.28e-01 | 92.4% | 49.1% |
| 1j0hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 42.0 | 4.83e-01 | 100.0% | 95.2% |
| 2g30A01 | 2.60.40.1150 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 41.0 | 4.16e-01 | 100.0% | 70.1% |
| 1b4tA00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.53 | 42.0 | 3.92e-01 | 98.3% | 66.7% |
| 2iteA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.89e-01 | 90.7% | 77.7% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.51 | 38.0 | 3.89e-01 | 89.0% | 84.8% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 36.0 | 3.15e-01 | 75.4% | 54.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046532 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.65 | 50.0 | 4.81e-01 | 89.8% | 71.1% |
| 3403140 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.61 | 38.0 | 3.89e-01 | 95.8% | 63.5% |
| 3724810 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.61 | 40.0 | 4.60e-01 | 94.9% | 94.1% |
| 3270571 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.61 | 39.0 | 3.82e-01 | 98.3% | 60.0% |
| 2527840 | 11.1.5.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PCuAC | 0.57 | 41.0 | 4.00e-01 | 94.9% | 69.3% |
| 5036913 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 39.0 | 4.32e-01 | 87.3% | 95.6% |
| 3384789 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.54 | 38.0 | 3.92e-01 | 98.3% | 77.3% |
| 3598070 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 4.15e-01 | 91.5% | 80.8% |
| 3062996 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 47.0 | 4.50e-01 | 98.3% | 89.9% |
| 4013561 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.58e-01 | 89.8% | 64.8% |
| 3407979 | 11.1.3.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu | 0.52 | 45.0 | 3.98e-01 | 98.3% | 64.0% |
| 4943345 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 4.02e-01 | 79.7% | 88.0% |
| 4416936 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.51 | 38.0 | 3.69e-01 | 89.8% | 68.1% |
D2
medium
residues 8-72
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.77 | 52.0 | 5.62e-01 | 72.3% | 83.6% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 46.0 | 3.98e-01 | 72.3% | 68.3% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 45.0 | 3.92e-01 | 72.3% | 68.9% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 55.0 | 4.62e-01 | 96.9% | 60.6% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 42.0 | 2.75e-01 | 78.5% | 20.4% |
| 1azoA00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.56 | 42.0 | 3.04e-01 | 84.6% | 30.8% |
| 1vm7B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 40.0 | 2.67e-01 | 78.5% | 20.9% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 40.0 | 2.56e-01 | 76.9% | 27.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 42.0 | 2.61e-01 | 89.2% | 98.7% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.54 | 37.0 | 3.01e-01 | 72.3% | 68.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4591362 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.60 | 43.0 | 3.17e-01 | 78.5% | 50.5% |
| 4457120 | 702.1.1.7 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_3 | 0.59 | 43.0 | 3.65e-01 | 80.0% | 85.2% |
| 4051792 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.59 | 42.0 | 3.66e-01 | 76.9% | 91.4% |
| 4396385 | 702.1.1.0 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.58 | 49.0 | 3.03e-01 | 100.0% | 86.1% |
| 4938012 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.57 | 49.0 | 3.09e-01 | 95.4% | 60.6% |
| 3386489 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.57 | 50.0 | 3.63e-01 | 96.9% | 36.5% |
| 4325842 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 41.0 | 2.78e-01 | 76.9% | 34.3% |
| 3289164 | 295.1.1.25 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 | 0.56 | 31.0 | 2.67e-01 | 72.3% | 30.9% |
| 3729058 | 5.1.4.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C | 0.56 | 42.0 | 2.69e-01 | 84.6% | 93.0% |
| 3801761 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.55 | 45.0 | 3.44e-01 | 90.8% | 58.7% |
| 4609520 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.55 | 40.0 | 2.68e-01 | 78.5% | 39.0% |
| 4956215 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 36.0 | 2.53e-01 | 72.3% | 56.4% |
| 4979605 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 36.0 | 2.52e-01 | 72.3% | 56.4% |
D3
medium
residues 77-188
Domain cluster:
representative