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OQ319121.1__WDS61127.1__SBM3_00039__00037
Bact-VirOQ319121.1__WDS61127.1__SBM3_00039__00037
Identity
- Accession:
- OQ319121 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-BM3
TaxID: 753087
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-58
Domain cluster:
rep: OR842557.1__WQZ01098.1__04086_4647__00104__D122-165
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.94 | 86.0 | 6.36e-01 | 100.0% | 43.1% |
| 3ltiA01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.73 | 54.0 | 3.68e-01 | 81.8% | 23.6% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.72 | 60.0 | 4.16e-01 | 100.0% | 27.7% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 49.0 | 3.78e-01 | 77.3% | 67.9% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.69 | 56.0 | 4.32e-01 | 100.0% | 39.3% |
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 58.0 | 4.06e-01 | 100.0% | 33.3% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.68 | 55.0 | 4.12e-01 | 100.0% | 53.2% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.67 | 55.0 | 3.76e-01 | 97.7% | 40.9% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.66 | 55.0 | 4.46e-01 | 100.0% | 53.2% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.62 | 47.0 | 4.23e-01 | 86.4% | 71.2% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 44.0 | 2.66e-01 | 79.5% | 11.0% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.61 | 53.0 | 3.86e-01 | 100.0% | 48.8% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.61 | 44.0 | 3.20e-01 | 79.5% | 50.4% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.60 | 49.0 | 3.01e-01 | 100.0% | 28.7% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 45.0 | 2.79e-01 | 86.4% | 15.7% |
| 1e69A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 48.0 | 3.06e-01 | 97.7% | 37.6% |
| 3s2kB01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 43.0 | 2.72e-01 | 84.1% | 13.4% |
| 1jnrB02 | 6.20.260.10 | Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain | 0.59 | 42.0 | 3.46e-01 | 72.7% | 38.6% |
| 1gydB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 44.0 | 2.82e-01 | 100.0% | 31.7% |
| 3oulA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 43.0 | 2.84e-01 | 88.6% | 99.1% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 41.0 | 3.15e-01 | 77.3% | 84.0% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 3.77e-01 | 90.9% | 82.7% |
| 3jb9K01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 41.0 | 2.55e-01 | 79.5% | 11.9% |
| 2y24A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 46.0 | 3.52e-01 | 93.2% | 92.5% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 46.0 | 3.54e-01 | 100.0% | 55.5% |
| 1qi9A00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.55 | 46.0 | 2.61e-01 | 100.0% | 42.7% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.54 | 35.0 | 3.53e-01 | 70.5% | 65.1% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.54 | 43.0 | 2.99e-01 | 100.0% | 44.2% |
| 3d7rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 41.0 | 2.58e-01 | 93.2% | 83.1% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 41.0 | 3.32e-01 | 93.2% | 57.1% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 38.0 | 3.41e-01 | 81.8% | 71.4% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.31e-01 | 100.0% | 52.0% |
| 5tdeA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 36.0 | 2.67e-01 | 84.1% | 31.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995814 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.96 | 85.0 | 5.56e-01 | 100.0% | 26.2% |
| 441013 | 79.1.1.1 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C | 0.94 | 85.0 | 5.26e-01 | 100.0% | 20.1% |
| 2983288 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 51.0 | 4.13e-01 | 84.1% | 43.8% |
| 3225336 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.68 | 58.0 | 4.12e-01 | 100.0% | 35.9% |
| 4998507 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.67 | 51.0 | 4.88e-01 | 84.1% | 70.4% |
| 3912697 | 292.2.1.3 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 | 0.67 | 54.0 | 4.18e-01 | 100.0% | 38.2% |
| 4951804 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.67 | 54.0 | 3.93e-01 | 97.7% | 32.9% |
| 4025709 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.66 | 56.0 | 5.00e-01 | 100.0% | 76.9% |
| 4248250 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.65 | 47.0 | 3.17e-01 | 79.5% | 22.2% |
| 4988423 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.65 | 48.0 | 4.04e-01 | 81.8% | 45.0% |
| 4302456 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.65 | 55.0 | 4.46e-01 | 100.0% | 48.9% |
| 5010111 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.65 | 47.0 | 3.46e-01 | 79.5% | 28.0% |
| 3705072 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.63 | 52.0 | 3.96e-01 | 100.0% | 94.8% |
| 5041686 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.62 | 50.0 | 3.64e-01 | 97.7% | 73.1% |
| 3284034 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.62 | 52.0 | 3.48e-01 | 100.0% | 74.8% |
| 4501642 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.62 | 44.0 | 3.92e-01 | 79.5% | 50.0% |
| 3888634 | 5.1.4.450 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ldl_recept_b | 0.61 | 44.0 | 3.15e-01 | 81.8% | 24.5% |
| 3987339 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.61 | 48.0 | 3.53e-01 | 100.0% | 36.8% |
| 3605378 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.60 | 50.0 | 3.87e-01 | 100.0% | 95.5% |
| 5643 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.59 | 50.0 | 4.36e-01 | 100.0% | 90.1% |
| 3609520 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 46.0 | 3.74e-01 | 93.2% | 72.6% |
| 4868007 | 5.1.2.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL | 0.57 | 43.0 | 2.72e-01 | 84.1% | 15.0% |
| 3974596 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 39.0 | 3.76e-01 | 77.3% | 61.8% |
| 3466771 | 375.3.1.2 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL | 0.56 | 38.0 | 3.67e-01 | 75.0% | 60.0% |
| 3218646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 3.64e-01 | 100.0% | 56.9% |
| 3816490 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.52 | 41.0 | 2.52e-01 | 100.0% | 17.6% |
| 3534499 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 39.0 | 2.78e-01 | 86.4% | 37.9% |
| 4961197 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 38.0 | 3.39e-01 | 95.5% | 54.3% |
| 3254426 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.50 | 38.0 | 2.94e-01 | 100.0% | 51.9% |