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OQ319121.1__WDS61274.1__SBM3_00195__00184

Bact-Vir

OQ319121.1__WDS61274.1__SBM3_00195__00184

Identity

Accession:
OQ319121 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-BM3

TaxID: 753087

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-89
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g7iA02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 44.0 3.98e-01 95.5% 72.3%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.54 41.0 3.57e-01 84.1% 62.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926576 1.1.9.33 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_NSUN2 0.57 47.0 3.99e-01 100.0% 82.5%
3880542 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.54 42.0 3.93e-01 97.7% 68.3%
3640268 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 37.0 2.80e-01 79.5% 41.6%
5008350 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 44.0 3.68e-01 100.0% 60.0%
D2 high residues 142-183
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.79e-01 90.5% 56.5%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.47e-01 100.0% 10.4%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 37.0 2.17e-01 90.5% 7.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.29e-01 90.5% 41.9%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.54 41.0 3.17e-01 92.9% 42.1%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 36.0 2.11e-01 90.5% 7.2%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.05e-01 100.0% 70.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.53 40.0 3.92e-01 90.5% 90.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 45.0 3.60e-01 100.0% 57.3%
4oxiA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 39.0 3.14e-01 88.1% 49.0%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.23e-01 78.6% 52.3%
6p0cA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 2.99e-01 100.0% 93.2%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 41.0 3.24e-01 97.6% 50.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959660 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.73 63.0 4.35e-01 100.0% 37.8%
3952792 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.71 60.0 4.17e-01 100.0% 34.7%
3278805 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.70 60.0 4.14e-01 100.0% 38.6%
3955267 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.69 57.0 4.12e-01 100.0% 38.8%
3962216 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.68 56.0 4.01e-01 100.0% 37.9%
3953672 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.66 54.0 3.78e-01 100.0% 34.2%
3422527 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.56 46.0 3.45e-01 100.0% 71.3%
3706360 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.71e-01 100.0% 12.6%
4937420 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 46.0 2.63e-01 97.6% 30.1%
3227081 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.79e-01 97.6% 95.0%
4937757 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.54 43.0 3.00e-01 100.0% 100.0%
4953226 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 44.0 3.86e-01 95.2% 69.2%
3307408 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 41.0 3.40e-01 100.0% 72.2%
3520687 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 43.0 3.00e-01 100.0% 85.0%
3653490 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 38.0 2.43e-01 95.2% 32.4%
D3 high residues 220-330
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335