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OQ319938.1__WFG37979.1__20Sep420_00095__00094

Bact-Vir

OQ319938.1__WFG37979.1__20Sep420_00095__00094

Identity

Accession:
OQ319938 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-236
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.78 56.0 6.16e-01 84.1% 87.6%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.76 53.0 5.69e-01 85.8% 80.1%
1i74A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.74 26.0 3.67e-01 75.1% 63.0%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.73 57.0 5.88e-01 86.7% 83.1%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.69 54.0 5.58e-01 80.7% 89.2%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.69 25.0 3.42e-01 75.1% 62.5%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.67 46.0 4.88e-01 81.1% 77.8%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.63 50.0 5.15e-01 80.7% 87.7%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 25.0 3.16e-01 85.0% 59.6%
5zyuA01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.60 48.0 5.12e-01 81.1% 95.5%
1t0fA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 33.0 3.95e-01 79.8% 85.2%
8dqoB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 27.0 3.04e-01 96.1% 60.1%
2og4A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 34.0 3.41e-01 99.6% 61.8%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 26.0 2.83e-01 76.4% 56.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942551 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.86 61.0 6.32e-01 84.5% 75.9%
4928680 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 50.0 5.57e-01 84.5% 76.8%
5000157 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.79 52.0 5.65e-01 85.4% 77.0%
5012280 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.77 51.0 5.49e-01 80.7% 76.6%
222168 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 53.0 5.69e-01 85.8% 80.1%
424674 2008.1.1.50 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ 0.74 58.0 5.87e-01 86.7% 81.2%
3588071 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 48.0 5.84e-01 80.3% 97.5%
4943737 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 48.0 5.79e-01 80.3% 97.5%
3969697 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 46.0 5.64e-01 80.3% 96.8%
4630823 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.67 25.0 3.48e-01 75.1% 65.2%
3976411 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.66 55.0 5.39e-01 86.7% 90.2%
3414564 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.66 51.0 4.76e-01 80.3% 76.5%
4252932 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.64 51.0 4.41e-01 82.0% 73.0%
4010258 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.61 51.0 4.89e-01 86.3% 89.4%
4436952 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 22.0 2.91e-01 76.4% 54.5%
4031223 2008.1.1.204 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 0.60 47.0 4.64e-01 81.1% 81.6%
3580762 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 40.0 3.85e-01 81.1% 62.0%
3617935 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 27.0 3.12e-01 80.7% 59.2%
4991290 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 47.0 4.51e-01 85.8% 90.0%
3280439 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.56 35.0 3.94e-01 82.4% 78.8%
3218243 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 18.0 2.90e-01 96.6% 75.3%
4942149 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 31.0 3.77e-01 85.8% 84.5%
3936120 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.54 49.0 4.35e-01 97.9% 74.0%
4122042 3105.1.1.1 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.53 22.0 2.85e-01 75.5% 62.2%
4955135 2008.1.1.159 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 0.52 49.0 4.43e-01 99.1% 87.7%
3499164 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 46.0 4.23e-01 95.3% 81.3%
3184260 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.52 47.0 3.99e-01 98.3% 71.6%
4990485 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 35.0 3.99e-01 95.3% 90.3%
4014350 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 45.0 3.99e-01 97.9% 72.5%
3588498 7581.1.1.9 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C 0.50 27.0 3.62e-01 100.0% 95.4%
D2 medium residues 275-322
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.79 67.0 5.91e-01 93.8% 76.8%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.77 62.0 6.48e-01 87.5% 100.0%
1b0yA00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.74 64.0 5.32e-01 97.9% 58.8%
2y8nB02 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.72 58.0 5.99e-01 87.5% 100.0%
1pihA00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.68 57.0 4.95e-01 93.8% 61.6%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 46.0 3.38e-01 79.2% 82.7%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 44.0 3.29e-01 72.9% 87.7%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 45.0 3.31e-01 75.0% 76.4%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.62 45.0 3.71e-01 79.2% 53.8%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 40.0 4.22e-01 72.9% 81.4%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.58 40.0 2.54e-01 72.9% 83.6%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 39.0 3.89e-01 70.8% 100.0%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 43.0 3.44e-01 83.3% 100.0%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.55 48.0 3.76e-01 97.9% 52.9%
1f9xA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.55 41.0 3.29e-01 87.5% 47.9%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 37.0 2.71e-01 70.8% 44.4%
4k47A00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.54 40.0 2.89e-01 89.6% 88.0%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.53 39.0 2.56e-01 83.3% 87.0%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.25e-01 97.9% 91.0%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 2.63e-01 70.8% 67.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584741 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 52.0 5.35e-01 75.0% 100.0%
3940506 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.72 50.0 4.97e-01 72.9% 88.0%
7994 374.1.1.1 few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP 0.72 61.0 5.36e-01 97.9% 63.4%
4930638 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.70 49.0 3.10e-01 75.0% 27.3%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 49.0 4.53e-01 77.1% 80.0%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.69 49.0 4.51e-01 77.1% 80.0%
3995950 376.1.6.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.69 46.0 4.54e-01 70.8% 73.6%
3724438 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.68 47.0 4.29e-01 72.9% 58.5%
3437513 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.67 44.0 4.04e-01 85.4% 50.8%
3538735 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.67 46.0 3.43e-01 70.8% 85.8%
3633967 376.1.6.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.67 48.0 4.02e-01 77.1% 48.2%
3748079 376.1.6.10 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.67 45.0 3.21e-01 70.8% 25.8%
3566936 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.67 45.0 4.18e-01 72.9% 60.0%
3584026 376.1.6.11 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, IBR_1 0.67 45.0 3.18e-01 70.8% 25.6%
3406961 376.1.6.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.66 47.0 4.32e-01 77.1% 63.1%
3748179 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.66 45.0 3.75e-01 72.9% 54.4%
3197309 376.1.4.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.66 48.0 3.73e-01 79.2% 38.2%
3891437 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.66 42.0 4.04e-01 70.8% 56.4%
3643546 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.66 45.0 5.03e-01 72.9% 100.0%
3262965 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.66 45.0 4.14e-01 72.9% 56.2%
3906547 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.65 44.0 3.30e-01 70.8% 79.2%
3314132 376.1.6.10 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.65 47.0 3.39e-01 79.2% 29.3%
3893875 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.65 49.0 4.20e-01 83.3% 66.3%
3998218 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.64 43.0 3.06e-01 70.8% 83.1%
1507759 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.64 45.0 3.29e-01 75.0% 71.6%
3846875 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.63 41.0 3.73e-01 70.8% 47.7%
3901193 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.63 47.0 3.72e-01 83.3% 43.8%
4011241 376.1.6.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.63 39.0 3.84e-01 72.9% 54.5%
3607772 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.63 42.0 3.57e-01 77.1% 41.2%
4022423 376.1.6.7 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_2 0.63 42.0 3.68e-01 70.8% 55.0%
3794091 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.62 46.0 4.12e-01 83.3% 57.3%
3728776 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.62 43.0 3.84e-01 77.1% 50.0%
3716212 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.62 47.0 3.94e-01 83.3% 85.9%
3435472 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.62 38.0 3.54e-01 72.9% 44.6%
3542924 386.1.1.24 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.62 52.0 4.21e-01 100.0% 94.0%
3594243 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.62 48.0 3.61e-01 87.5% 68.8%
3767237 101.1.1.386 alpha arrays › HTH › HTH › Three-helical HTH › zf-C2H2_4 0.62 52.0 4.22e-01 100.0% 94.9%
3467249 376.1.4.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.62 45.0 4.11e-01 79.2% 61.5%
3906050 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.62 46.0 4.21e-01 83.3% 79.1%
3873719 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.61 39.0 3.72e-01 75.0% 51.7%
3585112 376.1.6.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.61 43.0 3.94e-01 77.1% 55.4%
5059258 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.60 45.0 2.94e-01 83.3% 18.2%
3242627 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.60 42.0 3.61e-01 77.1% 45.0%
3784620 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.60 40.0 3.94e-01 70.8% 69.1%
3403338 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.60 47.0 4.15e-01 91.7% 96.0%
3259856 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.56 41.0 3.80e-01 81.2% 60.0%
3936491 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.52 43.0 3.51e-01 97.9% 73.0%
3238220 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.52 34.0 3.17e-01 75.0% 44.6%
4951908 2007.1.14.32 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › 2-thiour_desulf 0.52 43.0 2.84e-01 100.0% 40.9%