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OQ330851.1__WDS38386.1__W2_gp018__00017

Bact-Vir

OQ330851.1__WDS38386.1__W2_gp018__00017

Identity

Accession:
OQ330851 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_W2

TaxID: 3028192

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-87
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22262.3 best DUF6950 33.6 5.50e-08 93.1% 40.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.57 41.0 3.42e-01 75.9% 59.4%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 37.0 3.59e-01 75.9% 65.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3795237 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.62 37.0 3.40e-01 94.3% 44.3%
2819638 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.52 43.0 3.93e-01 90.8% 79.3%
D2 medium residues 88-162
PDB
Domain cluster: rep: OY979482.1__CAK6605282.1__K4PH164_LOCUS19__00019__D79-135
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.81 65.0 5.41e-01 97.3% 52.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 64.0 5.31e-01 100.0% 52.7%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 62.0 4.91e-01 98.7% 51.4%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 58.0 4.17e-01 100.0% 43.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 4.69e-01 100.0% 57.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.73e-01 84.0% 89.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.98e-01 90.7% 100.0%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 4.06e-01 88.0% 100.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 3.78e-01 73.3% 87.9%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.74e-01 84.0% 100.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.44e-01 82.7% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.58e-01 86.7% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.15e-01 92.0% 84.4%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 39.0 3.51e-01 86.7% 52.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.55 44.0 3.88e-01 85.3% 58.7%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.55 41.0 3.26e-01 81.3% 85.5%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 31.0 3.30e-01 84.0% 63.6%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 40.0 3.07e-01 88.0% 34.5%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.22e-01 85.3% 99.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.15e-01 89.3% 84.3%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 45.0 4.03e-01 96.0% 95.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.99e-01 90.7% 83.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.52 42.0 3.27e-01 90.7% 98.3%
8dwoK02 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.52 39.0 4.15e-01 100.0% 95.3%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.52 43.0 3.62e-01 96.0% 81.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 33.0 3.67e-01 81.3% 92.6%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.49e-01 82.7% 88.1%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.66e-01 88.0% 84.3%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.79e-01 94.7% 93.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.84e-01 94.7% 71.6%
4bh5A00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 34.0 2.97e-01 70.7% 99.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.17e-01 84.0% 66.0%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.50 34.0 3.00e-01 70.7% 94.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517692 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.78 62.0 5.15e-01 98.7% 50.4%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.74 57.0 4.75e-01 94.7% 48.8%
3975571 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.73 62.0 4.57e-01 100.0% 36.8%
161350 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.69 63.0 4.96e-01 98.7% 51.0%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 55.0 4.57e-01 100.0% 48.9%
3225736 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.67 59.0 4.78e-01 100.0% 68.0%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 45.0 5.07e-01 86.7% 96.4%
3341084 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.64 52.0 4.72e-01 88.0% 100.0%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.99e-01 90.7% 93.3%
3384708 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.64 56.0 4.04e-01 100.0% 54.7%
4882197 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 56.0 4.88e-01 100.0% 66.9%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.63 56.0 4.45e-01 98.7% 56.7%
3468015 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.63 53.0 4.22e-01 93.3% 58.1%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 5.00e-01 84.0% 100.0%
3721314 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.62 50.0 4.36e-01 88.0% 100.0%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 44.0 4.89e-01 92.0% 93.3%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.78e-01 85.3% 96.4%
4536562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.45e-01 90.7% 74.7%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.52e-01 78.7% 90.9%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.60 51.0 5.22e-01 93.3% 100.0%
4242302 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.60 44.0 4.57e-01 88.0% 82.9%
3697694 4.1.1.288 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6540 0.59 48.0 4.14e-01 89.3% 99.2%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 42.0 4.41e-01 92.0% 81.4%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 40.0 4.51e-01 86.7% 98.2%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.57 50.0 4.80e-01 97.3% 94.1%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 41.0 3.84e-01 89.3% 62.2%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 45.0 4.76e-01 92.0% 96.9%
3302829 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 42.0 4.52e-01 90.7% 93.8%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.54e-01 96.0% 86.3%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 43.0 4.03e-01 93.3% 67.8%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.38e-01 90.7% 84.0%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.56 48.0 4.08e-01 96.0% 88.8%
5067286 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 42.0 3.98e-01 96.0% 69.7%
3245086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.36e-01 97.3% 81.1%
5070306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.33e-01 97.3% 96.0%
3290647 3174.4.1.1 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 0.54 37.0 3.88e-01 72.0% 88.6%
3774803 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.54 45.0 2.90e-01 92.0% 80.3%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.16e-01 84.0% 96.2%
3211748 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.42e-01 85.3% 77.9%
3298989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.87e-01 90.7% 61.8%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.52 42.0 3.28e-01 96.0% 40.0%
3967347 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 41.0 4.20e-01 89.3% 90.7%
158488 10.1.1.33 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TgMIC1 0.52 43.0 3.62e-01 96.0% 81.8%
3630840 5.1.3.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Phytase 0.51 42.0 2.78e-01 96.0% 87.2%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.85e-01 89.3% 91.6%
3692287 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.49e-01 89.3% 95.9%
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 42.0 3.32e-01 97.3% 88.6%
5054830 5.1.2.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FG-GAP_3 0.50 41.0 2.95e-01 94.7% 97.6%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 43.0 3.09e-01 96.0% 40.9%