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OQ331036.1__WCZ66178.1__X__00014

Bact-Vir

OQ331036.1__WCZ66178.1__X__00014

Identity

Accession:
OQ331036 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Yersinia_phage_MHG19

TaxID: 3025402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-91
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.68 43.0 4.04e-01 76.7% 51.4%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 4.02e-01 98.8% 37.4%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.63 56.0 5.14e-01 100.0% 93.8%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.62 53.0 5.14e-01 98.8% 85.3%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 41.0 3.59e-01 96.5% 46.1%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 42.0 3.02e-01 72.1% 96.9%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.61 52.0 4.79e-01 96.5% 83.2%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.60 48.0 4.59e-01 95.3% 75.8%
3kd9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.73e-01 96.5% 36.9%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 51.0 4.72e-01 100.0% 82.3%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.72e-01 100.0% 85.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.60e-01 100.0% 78.2%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 41.0 4.26e-01 75.6% 82.9%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 4.83e-01 100.0% 95.1%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 5.03e-01 100.0% 94.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 51.0 4.49e-01 100.0% 83.9%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 41.0 3.57e-01 79.1% 52.5%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.53e-01 100.0% 89.7%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.37e-01 100.0% 78.3%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.61e-01 100.0% 85.5%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.69e-01 98.8% 92.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 33.0 3.67e-01 90.7% 78.5%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 4.01e-01 97.7% 69.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.07e-01 97.7% 83.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 49.0 4.32e-01 100.0% 82.3%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 41.0 3.44e-01 82.6% 96.8%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.72e-01 89.5% 63.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 4.65e-01 98.8% 98.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.73e-01 94.2% 67.3%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.34e-01 98.8% 94.2%
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 39.0 3.38e-01 76.7% 66.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 48.0 4.37e-01 100.0% 84.6%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 43.0 3.44e-01 88.4% 92.3%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 4.22e-01 91.9% 99.0%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.69e-01 89.5% 60.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 48.0 4.24e-01 100.0% 73.4%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 4.28e-01 100.0% 94.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 33.0 3.83e-01 91.9% 96.5%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.52 44.0 3.88e-01 98.8% 93.4%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 36.0 3.11e-01 74.4% 61.1%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.53e-01 93.0% 59.9%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.19e-01 73.3% 60.0%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.27e-01 100.0% 100.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.42e-01 100.0% 57.8%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.51 43.0 3.47e-01 100.0% 84.9%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 30.0 3.35e-01 91.9% 79.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3867103 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.70 43.0 4.03e-01 74.4% 51.4%
3427875 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.68 51.0 4.17e-01 79.1% 56.8%
3226023 3156.1.1.9 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 0.67 46.0 3.54e-01 97.7% 31.0%
4610051 295.1.1.43 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29940 0.67 59.0 4.68e-01 100.0% 88.9%
3397097 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.62 47.0 3.06e-01 81.4% 70.1%
3275844 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.61 46.0 2.91e-01 100.0% 16.9%
None — 0.60 54.0 4.66e-01 100.0% 88.9%
3341174 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 53.0 4.50e-01 100.0% 82.8%
3624184 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 46.0 4.21e-01 83.7% 96.5%
4015146 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.59 52.0 4.04e-01 98.8% 75.4%
None — 0.59 53.0 4.47e-01 100.0% 81.4%
3905168 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 54.0 4.66e-01 100.0% 75.4%
3471801 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 4.58e-01 100.0% 73.3%
3853196 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 4.52e-01 100.0% 70.0%
3497046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 4.84e-01 100.0% 87.0%
4488006 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 47.0 3.30e-01 89.5% 46.1%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.58 45.0 4.79e-01 95.3% 94.7%
3598308 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 50.0 3.17e-01 97.7% 17.4%
3593969 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.52e-01 100.0% 92.3%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 2.69e-01 76.7% 29.6%
3274553 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 52.0 4.84e-01 100.0% 92.4%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.57 45.0 4.67e-01 95.3% 90.0%
3583313 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 51.0 4.47e-01 100.0% 80.0%
3494650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 52.0 4.37e-01 100.0% 67.9%
3861121 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 51.0 4.66e-01 100.0% 82.6%
3402486 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 52.0 4.39e-01 100.0% 73.9%
3248668 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.57 45.0 4.66e-01 98.8% 92.5%
3498392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.51e-01 100.0% 93.3%
3503857 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 51.0 4.69e-01 100.0% 83.6%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.56 50.0 4.65e-01 100.0% 84.5%
3548074 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 50.0 4.52e-01 100.0% 85.0%
3481724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 4.66e-01 100.0% 90.9%
3538471 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 50.0 4.51e-01 100.0% 83.3%
3717734 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 51.0 4.46e-01 100.0% 87.2%
3227607 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.56 49.0 3.45e-01 100.0% 77.2%
3718039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.92e-01 100.0% 63.4%
3516909 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 3.88e-01 100.0% 61.7%
3390005 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 49.0 4.24e-01 100.0% 84.4%
3415886 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.55 48.0 4.87e-01 98.8% 96.5%
3591171 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.54 47.0 4.10e-01 100.0% 82.9%
3592358 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 49.0 4.47e-01 100.0% 90.4%
3217950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.50e-01 100.0% 97.1%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 4.20e-01 100.0% 77.7%
3254167 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 3.22e-01 100.0% 29.6%
3670573 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 3.76e-01 100.0% 71.9%
3398310 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 4.30e-01 100.0% 89.6%
3703442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.69e-01 100.0% 96.5%
4022367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.45e-01 97.7% 87.0%
3473704 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.68e-01 100.0% 96.5%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.53 46.0 4.56e-01 98.8% 93.4%
4030625 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.53 45.0 3.34e-01 95.3% 44.8%
3703080 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 48.0 3.95e-01 100.0% 83.2%
3601598 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 4.22e-01 100.0% 78.3%
3094740 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.53 47.0 4.03e-01 100.0% 84.3%
3932851 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.53 47.0 4.23e-01 100.0% 86.7%
3637283 5.1.4.441 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.53 46.0 2.98e-01 100.0% 22.2%
3679340 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 36.0 3.36e-01 70.9% 90.0%
3607857 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.70e-01 80.2% 94.0%
5071437 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 43.0 3.25e-01 95.3% 88.0%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.51 46.0 3.02e-01 98.8% 32.2%
3195138 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 47.0 3.01e-01 100.0% 41.0%
3638760 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.51 46.0 3.06e-01 100.0% 25.4%
134926 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 44.0 3.59e-01 93.0% 62.9%
3266903 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 45.0 4.15e-01 100.0% 90.9%
3709124 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.50 46.0 2.82e-01 100.0% 32.0%
4992282 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 41.0 3.64e-01 93.0% 64.4%