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OQ331036.1__WCZ66259.1__X__00095

Bact-Vir

OQ331036.1__WCZ66259.1__X__00095

Identity

Accession:
OQ331036 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Yersinia_phage_MHG19

TaxID: 3025402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ig9B00 3.90.930.20 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Small outer capsid protein Soc 0.88 81.0 7.38e-01 100.0% 88.3%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.72 51.0 4.58e-01 75.0% 79.3%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 44.0 3.90e-01 70.0% 57.0%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 43.0 3.12e-01 70.0% 49.4%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.63 47.0 3.44e-01 80.0% 35.6%
1mjgM05 3.40.1470.10 Alpha Beta › 3-Layer(aba) Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 0.61 51.0 4.09e-01 100.0% 86.9%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 44.0 4.49e-01 95.0% 84.2%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 41.0 2.99e-01 81.7% 65.6%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.12e-01 80.0% 65.0%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 35.0 3.28e-01 71.7% 52.0%
3ig5A02 3.30.590.50 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.54 46.0 2.89e-01 100.0% 33.8%
3memA01 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.54 41.0 3.32e-01 91.7% 77.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 43.0 3.83e-01 93.3% 95.7%
2qdlA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.77e-01 78.3% 98.4%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 41.0 3.37e-01 93.3% 57.8%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.95e-01 85.0% 80.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2117516 3101.1.1.1 ↗ a+b two layers › Small outer capsid protein (Soc) › Small outer capsid protein (Soc) › Small outer capsid protein (Soc) › Soc 0.89 82.0 7.39e-01 100.0% 88.6%
4928962 375.5.1.0 ↗ few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like 0.62 43.0 4.38e-01 73.3% 78.3%
4933437 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.62 41.0 3.36e-01 73.3% 38.0%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 42.0 3.33e-01 71.7% 34.4%
4321682 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.61 41.0 3.12e-01 70.0% 50.7%
4605018 221.1.1.54 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ras_bdg_2 0.58 39.0 3.26e-01 71.7% 39.1%
4929409 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.09e-01 73.3% 76.3%
4547125 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.55 40.0 4.32e-01 80.0% 100.0%
3988063 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.89e-01 95.0% 72.3%
3282260 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.54 41.0 3.65e-01 83.3% 95.6%
3596156 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 44.0 3.56e-01 100.0% 86.4%
3433661 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.52 34.0 3.77e-01 70.0% 100.0%
3255841 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.52 43.0 3.10e-01 98.3% 76.5%
4933617 375.11.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ › NAPRTase_C 0.52 38.0 3.49e-01 78.3% 98.7%
4436337 7510.1.1.5 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA 0.52 44.0 3.47e-01 100.0% 92.1%
5041946 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.97e-01 96.7% 76.0%
4971115 2002.4.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.51 37.0 2.45e-01 81.7% 88.7%