Back to structures

OQ331036.1__WCZ66294.1__X__00130

Bact-Vir

OQ331036.1__WCZ66294.1__X__00130

Identity

Accession:
OQ331036 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-67
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26821.1 best Phage_T4_Y16F 52.0 1.00e-13 100.0% 57.4%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.72 54.0 4.51e-01 81.5% 69.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 54.0 4.30e-01 86.2% 77.0%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 55.0 3.52e-01 87.7% 20.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 54.0 4.28e-01 86.2% 77.6%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 53.0 4.22e-01 86.2% 77.5%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.68 54.0 3.82e-01 87.7% 85.9%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.66 58.0 5.42e-01 96.9% 95.0%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 51.0 3.32e-01 87.7% 21.9%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.64 52.0 4.25e-01 89.2% 79.5%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.64 52.0 3.96e-01 89.2% 99.3%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.64 50.0 3.16e-01 86.2% 56.1%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 53.0 4.50e-01 93.8% 73.4%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 50.0 4.05e-01 89.2% 62.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.42e-01 70.8% 96.6%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 45.0 4.21e-01 76.9% 80.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 3.74e-01 89.2% 41.0%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.61 50.0 3.79e-01 95.4% 83.7%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.61 50.0 4.09e-01 95.4% 86.3%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 45.0 4.65e-01 83.1% 95.1%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 3.83e-01 86.2% 79.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 50.0 4.05e-01 95.4% 56.3%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 49.0 3.86e-01 89.2% 76.5%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 51.0 4.02e-01 95.4% 85.7%
1q2yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.67e-01 86.2% 81.4%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 52.0 4.63e-01 98.5% 74.5%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.59 46.0 3.45e-01 89.2% 54.9%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 50.0 3.38e-01 96.9% 48.0%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 50.0 3.76e-01 96.9% 81.2%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.58 40.0 3.85e-01 70.8% 79.7%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 44.0 2.88e-01 83.1% 33.1%
2pr1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 46.0 3.56e-01 89.2% 80.3%
3d2mA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 47.0 3.61e-01 90.8% 74.7%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 47.0 4.15e-01 93.8% 90.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.57 46.0 4.34e-01 87.7% 88.5%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.57 40.0 3.66e-01 73.8% 81.2%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 44.0 3.97e-01 90.8% 66.0%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.56 49.0 4.03e-01 96.9% 75.4%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.56 42.0 3.55e-01 80.0% 47.8%
2cntA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.45e-01 87.7% 75.5%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.06e-01 96.9% 82.3%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 40.0 2.42e-01 75.4% 98.4%
3dddA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 46.0 3.76e-01 95.4% 91.5%
2pdoA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.57e-01 87.7% 95.2%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.55 43.0 3.74e-01 87.7% 90.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.55 46.0 3.70e-01 95.4% 51.1%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.30e-01 87.7% 79.2%
2d4oA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.60e-01 90.8% 86.8%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.54 42.0 3.39e-01 86.2% 42.0%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 37.0 3.82e-01 100.0% 75.0%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 46.0 3.43e-01 98.5% 77.7%
7k98B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 3.08e-01 100.0% 27.8%
3l4gB04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 3.15e-01 100.0% 99.0%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.92e-01 92.3% 98.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386462 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.76 54.0 4.55e-01 73.8% 52.4%
3340222 3131.1.1.3 a+b two layers › FYR domain › FYR domain › FYR domain › FYRC 0.75 59.0 4.72e-01 84.6% 68.0%
3999814 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.74 58.0 4.25e-01 86.2% 48.0%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.72 53.0 4.20e-01 78.5% 51.9%
3979087 4100.1.1.7 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.71 44.0 4.31e-01 70.8% 57.1%
3675633 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.71 42.0 5.24e-01 81.5% 100.0%
3387460 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 57.0 4.72e-01 87.7% 94.8%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.70 58.0 5.01e-01 90.8% 83.0%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.69 50.0 4.35e-01 76.9% 58.0%
5065809 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.69 61.0 4.52e-01 96.9% 50.0%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 48.0 3.32e-01 73.8% 27.1%
3690503 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.68 58.0 4.93e-01 96.9% 89.0%
3269422 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 48.0 3.20e-01 76.9% 23.0%
6667 4221.1.1.1 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.66 58.0 5.47e-01 96.9% 97.4%
3369217 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.65 46.0 3.87e-01 76.9% 76.5%
3290991 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.65 54.0 4.17e-01 93.8% 62.7%
3944846 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.64 46.0 3.91e-01 78.5% 55.7%
3987988 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.64 52.0 3.71e-01 87.7% 74.6%
3578128 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 44.0 4.66e-01 72.3% 92.7%
4958733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.79e-01 90.8% 71.2%
144577 331.3.1.22 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START_2 0.62 48.0 3.86e-01 83.1% 52.3%
3300506 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.62 50.0 3.98e-01 90.8% 51.4%
3229011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 49.0 3.79e-01 86.2% 70.3%
3286529 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.61 52.0 3.86e-01 92.3% 81.0%
5048797 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 48.0 4.28e-01 100.0% 58.9%
3348604 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 53.0 4.00e-01 98.5% 92.5%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 48.0 3.86e-01 86.2% 79.1%
4117274 1.1.10.0 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.61 41.0 4.70e-01 72.3% 100.0%
3188402 4099.1.1.31 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.60 48.0 3.56e-01 93.8% 48.5%
5004750 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 47.0 2.99e-01 87.7% 36.3%
5008130 213.1.1.35 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.59 44.0 3.91e-01 80.0% 78.9%
3942497 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 41.0 3.22e-01 72.3% 39.1%
4929701 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 38.0 3.94e-01 100.0% 71.7%
5046796 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 47.0 3.53e-01 87.7% 78.8%
4161409 1.1.10.1 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.58 41.0 4.02e-01 75.4% 95.9%
3960569 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 47.0 4.18e-01 90.8% 89.5%
3979218 1.1.10.1 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.58 41.0 4.43e-01 75.4% 90.9%
3580069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.96e-01 90.8% 26.4%
5024450 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 46.0 3.73e-01 92.3% 70.4%
3407180 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 3.82e-01 80.0% 91.8%
5051444 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.56 46.0 3.61e-01 95.4% 45.8%
4246572 1.1.10.1 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.55 39.0 3.65e-01 73.8% 83.7%
3388321 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 49.0 3.47e-01 100.0% 50.5%
3991063 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 40.0 2.97e-01 80.0% 45.8%
395916 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.55 43.0 3.46e-01 90.8% 68.5%
3971476 213.1.1.23 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PanZ 0.55 44.0 3.63e-01 92.3% 93.1%
3385757 1.1.10.1 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) › FliMN_C 0.54 39.0 3.56e-01 75.4% 82.4%
3204169 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.54 37.0 3.66e-01 72.3% 87.1%
3506401 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.92e-01 93.8% 96.8%
4003090 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.24e-01 96.9% 58.4%
3268322 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.52 46.0 2.92e-01 100.0% 90.3%
3504843 244.2.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.51 38.0 3.71e-01 98.5% 72.9%
1839931 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 40.0 3.20e-01 89.2% 71.1%
3970193 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.51 44.0 3.90e-01 96.9% 92.6%
3536576 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 39.0 3.69e-01 90.8% 75.3%
D2 medium residues 72-111
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4876629 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.79 63.0 4.03e-01 92.5% 20.0%