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OQ355703.1__WEU70522.1__BE25_0036__00036

Bact-Vir

OQ355703.1__WEU70522.1__BE25_0036__00036

Identity

Accession:
OQ355703 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sepunavirus› Staphylococcus_phage_vB_SepM_BE25

TaxID: 3028900

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.60 42.0 2.43e-01 76.7% 6.3%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.59 43.0 2.81e-01 70.0% 38.8%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.58 42.0 2.38e-01 83.3% 14.4%
2o7iA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.55 39.0 2.34e-01 70.0% 8.7%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 43.0 2.63e-01 70.0% 10.0%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 37.0 3.00e-01 70.0% 51.3%
2sqcA02 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 41.0 2.46e-01 100.0% 57.7%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.50 38.0 2.21e-01 96.7% 59.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 2.94e-01 70.0% 47.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503613 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.74 51.0 3.66e-01 70.0% 24.4%
3731212 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.64 50.0 3.77e-01 100.0% 34.1%
3356095 601.37.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 0.63 46.0 3.19e-01 96.7% 21.7%
4157635 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.61 46.0 3.09e-01 86.7% 86.4%
3653866 101.1.2.123 ↗ alpha arrays › HTH › HTH › winged helix domain › Paf67 0.60 46.0 3.37e-01 90.0% 63.0%
3187272 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 44.0 2.43e-01 73.3% 7.7%
4848450 304.48.1.6 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.58 45.0 3.11e-01 100.0% 25.9%
3667945 2002.1.1.64 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 0.55 39.0 2.21e-01 80.0% 79.3%
3192896 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.25e-01 70.0% 30.8%
4166178 101.1.8.4 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Flp_C 0.54 43.0 2.87e-01 93.3% 60.0%
3357775 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 38.0 2.82e-01 70.0% 75.6%
3406541 573.1.1.0 ↗ alpha duplicates or obligate multimers › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a 0.53 41.0 4.11e-01 80.0% 70.0%
3931837 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 2.60e-01 76.7% 34.5%
3183367 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.52 37.0 2.30e-01 93.3% 27.0%
3503754 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 2.67e-01 100.0% 82.7%
3209720 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 2.34e-01 76.7% 84.4%
4934465 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.51 38.0 2.36e-01 100.0% 39.6%
3876302 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.51 38.0 2.70e-01 70.0% 20.0%
3839545 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.51 42.0 2.37e-01 100.0% 34.4%
5046083 3987.1.1.0 ↗ a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.51 36.0 2.74e-01 70.0% 22.4%
5017363 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 35.0 2.17e-01 76.7% 84.2%
4016434 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.50 38.0 2.21e-01 96.7% 79.5%