←Back to structures

OQ355703.1__WEU70552.1__BE25_0066__00066

Bact-Vir

OQ355703.1__WEU70552.1__BE25_0066__00066

Identity

Accession:
OQ355703 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sepunavirus› Staphylococcus_phage_vB_SepM_BE25

TaxID: 3028900

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-42
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.87 75.0 6.19e-01 100.0% 57.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.85 73.0 5.93e-01 100.0% 55.6%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.83 71.0 6.92e-01 100.0% 91.5%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.78 65.0 6.36e-01 97.6% 89.1%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.78 65.0 6.14e-01 97.6% 100.0%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.77 68.0 6.35e-01 100.0% 80.8%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.77 69.0 4.63e-01 100.0% 28.5%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.74 60.0 4.11e-01 100.0% 25.6%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.73 57.0 5.64e-01 92.9% 97.9%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.72 60.0 4.87e-01 97.6% 50.6%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.72 61.0 4.97e-01 97.6% 67.1%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.72 59.0 4.93e-01 100.0% 54.9%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 60.0 5.81e-01 100.0% 93.8%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 54.0 5.24e-01 83.3% 87.5%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 60.0 3.85e-01 100.0% 18.9%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.69 60.0 4.73e-01 100.0% 52.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.68 54.0 5.22e-01 100.0% 82.4%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 57.0 4.09e-01 100.0% 32.8%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.67 57.0 5.37e-01 100.0% 92.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4877881 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 71.0 7.26e-01 100.0% 100.0%
2429105 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.81 66.0 5.61e-01 100.0% 54.1%
4369209 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.81 69.0 6.92e-01 97.6% 95.3%
4432094 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.80 68.0 6.59e-01 100.0% 87.5%
4640528 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.79 66.0 6.72e-01 95.2% 100.0%
4933309 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.77 67.0 5.98e-01 100.0% 75.0%
4469597 192.17.1.11 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › UVR 0.77 64.0 5.97e-01 100.0% 74.5%
3255954 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.76 63.0 5.62e-01 100.0% 64.6%
3230312 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.74 64.0 5.48e-01 100.0% 60.0%
3512341 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.00e-01 88.1% 92.9%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.73 56.0 4.76e-01 85.7% 91.4%
3509156 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.72 60.0 4.97e-01 90.5% 94.3%
4000709 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.70 60.0 4.99e-01 92.9% 94.3%
3935495 101.1.1.357 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ELP3_N 0.70 60.0 4.98e-01 92.9% 70.0%
4854384 5039.1.1.1 ↗ alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 0.69 57.0 4.49e-01 100.0% 44.6%