←Back to structures
OQ357865.1__WDS61326.1__SEA_MINIFLAYER_19__00019
Bact-VirOQ357865.1__WDS61326.1__SEA_MINIFLAYER_19__00019
Identity
- Accession:
- OQ357865 ↗
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-133
Domain cluster:
rep: MN234216.1__QFG13271.1__SEA_GILGAMESH_79__00079__D30-154
D2
medium
residues 255-308
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 71.0 | 6.16e-01 | 94.4% | 64.6% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 69.0 | 5.77e-01 | 94.4% | 59.3% |
| 2do7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 63.0 | 5.55e-01 | 96.3% | 71.2% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 56.0 | 5.22e-01 | 98.1% | 73.2% |
| 6e6qA00 | 1.10.10.1100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain | 0.68 | 56.0 | 5.55e-01 | 96.3% | 89.3% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.67 | 57.0 | 4.93e-01 | 98.1% | 63.6% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 4.25e-01 | 94.4% | 39.5% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 39.0 | 3.95e-01 | 75.9% | 58.2% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 57.0 | 4.75e-01 | 100.0% | 88.7% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.50e-01 | 88.9% | 67.2% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 53.0 | 3.54e-01 | 100.0% | 22.7% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 48.0 | 4.47e-01 | 87.0% | 80.0% |
| 3jtgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.25e-01 | 88.9% | 97.6% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 51.0 | 4.38e-01 | 94.4% | 76.7% |
| 1y88A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 50.0 | 4.92e-01 | 94.4% | 84.7% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 48.0 | 3.73e-01 | 98.1% | 58.8% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.58 | 43.0 | 3.20e-01 | 81.5% | 64.2% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 37.0 | 3.82e-01 | 74.1% | 69.8% |
| 2g7rA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 41.0 | 3.55e-01 | 77.8% | 70.9% |
| 1i36A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 43.0 | 3.70e-01 | 92.6% | 91.9% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 45.0 | 4.20e-01 | 90.7% | 77.6% |
| 4n6cB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 41.0 | 2.85e-01 | 81.5% | 35.4% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.54 | 39.0 | 2.69e-01 | 79.6% | 88.5% |
| 5tevB02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 44.0 | 3.74e-01 | 100.0% | 93.2% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 40.0 | 3.65e-01 | 83.3% | 90.5% |
| 1zu4A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.51 | 43.0 | 3.76e-01 | 98.1% | 64.4% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 39.0 | 3.76e-01 | 83.3% | 73.8% |
| 1kl7A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.51 | 41.0 | 3.60e-01 | 100.0% | 93.5% |
| 1nbwA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 41.0 | 3.23e-01 | 98.1% | 74.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5049455 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.81 | 69.0 | 5.07e-01 | 94.4% | 37.9% |
| 3266110 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.81 | 65.0 | 5.70e-01 | 94.4% | 60.0% |
| 3931083 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.79 | 63.0 | 6.52e-01 | 90.7% | 96.0% |
| 5029743 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 65.0 | 5.43e-01 | 94.4% | 55.8% |
| 4979742 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 63.0 | 5.62e-01 | 92.6% | 66.3% |
| 4032611 | 101.1.2.805 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26350 | 0.77 | 64.0 | 4.65e-01 | 92.6% | 42.0% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.77 | 60.0 | 5.38e-01 | 90.7% | 61.3% |
| 4939633 | 101.1.2.932 ↗ | alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc | 0.77 | 61.0 | 5.81e-01 | 94.4% | 74.6% |
| 5042816 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.76 | 63.0 | 5.45e-01 | 94.4% | 58.8% |
| 3506989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 61.0 | 6.33e-01 | 90.7% | 96.0% |
| 3218213 | 101.26.1.1 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N | 0.75 | 59.0 | 5.78e-01 | 88.9% | 78.3% |
| 3958096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 59.0 | 5.02e-01 | 94.4% | 52.2% |
| 4496656 | 101.1.1.374 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28962 | 0.75 | 62.0 | 5.92e-01 | 94.4% | 90.8% |
| 4993073 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.75 | 61.0 | 5.26e-01 | 94.4% | 57.8% |
| 3399164 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 52.0 | 5.61e-01 | 79.6% | 91.1% |
| 4978129 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 63.0 | 3.74e-01 | 98.1% | 15.9% |
| 3629800 | 101.26.1.1 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N | 0.73 | 57.0 | 5.52e-01 | 88.9% | 78.3% |
| 3544446 | 101.26.1.1 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N | 0.72 | 54.0 | 5.29e-01 | 87.0% | 75.0% |
| 3802428 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.72 | 60.0 | 5.32e-01 | 96.3% | 64.6% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 58.0 | 5.58e-01 | 94.4% | 78.5% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.70 | 58.0 | 5.84e-01 | 94.4% | 100.0% |
| 3617137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 60.0 | 5.98e-01 | 96.3% | 100.0% |
| 5028132 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.70 | 58.0 | 5.12e-01 | 94.4% | 82.5% |
| 3313889 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 55.0 | 5.61e-01 | 90.7% | 98.0% |
| 167309 | 592.2.1.3 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 | 0.69 | 55.0 | 4.60e-01 | 94.4% | 48.6% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 55.0 | 5.33e-01 | 90.7% | 95.0% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.67 | 54.0 | 4.98e-01 | 94.4% | 73.3% |
| 4953832 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.67 | 54.0 | 5.41e-01 | 90.7% | 94.5% |
| 2393452 | 101.43.1.1 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N | 0.67 | 55.0 | 5.50e-01 | 96.3% | 94.6% |
| 4615627 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.67 | 55.0 | 5.06e-01 | 98.1% | 85.3% |
| 4926838 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.66 | 53.0 | 5.05e-01 | 92.6% | 80.0% |
| 4959424 | 103.6.1.0 ↗ | alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain | 0.66 | 58.0 | 5.78e-01 | 98.1% | 98.2% |
| 3402551 | 101.1.2.75 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha | 0.66 | 55.0 | 5.26e-01 | 96.3% | 81.5% |
| 3736802 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 53.0 | 5.17e-01 | 94.4% | 88.3% |
| 5038818 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.65 | 53.0 | 3.39e-01 | 94.4% | 21.8% |
| 3337098 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 52.0 | 4.50e-01 | 98.1% | 87.4% |
| 4274627 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.64 | 50.0 | 4.93e-01 | 94.4% | 85.0% |
| 4927588 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.46e-01 | 90.7% | 68.0% |
| 3652523 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.59 | 41.0 | 3.04e-01 | 74.1% | 90.0% |
| 4207615 | 170.2.1.28 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PNMA | 0.57 | 41.0 | 3.94e-01 | 79.6% | 84.6% |
| 53225 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.56 | 46.0 | 3.75e-01 | 92.6% | 84.9% |
| 3887783 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.54 | 37.0 | 2.91e-01 | 75.9% | 84.4% |
| 2507422 | 632.2.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA | 0.51 | 39.0 | 3.88e-01 | 79.6% | 85.5% |