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OQ357865.1__WDS61330.1__SEA_MINIFLAYER_23__00023

Bact-Vir

OQ357865.1__WDS61330.1__SEA_MINIFLAYER_23__00023

Identity

Accession:
OQ357865 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 64.0 6.42e-01 79.2% 76.9%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 58.0 6.28e-01 70.1% 84.6%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.84 63.0 4.78e-01 77.9% 41.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 64.0 6.58e-01 81.8% 85.1%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 59.0 6.77e-01 75.3% 100.0%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.81 57.0 3.83e-01 72.7% 46.6%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 55.0 4.62e-01 70.1% 58.5%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 61.0 5.52e-01 80.5% 64.1%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 61.0 6.04e-01 80.5% 76.5%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 61.0 6.31e-01 80.5% 84.9%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.80 58.0 5.80e-01 80.5% 74.4%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.80 57.0 6.14e-01 74.0% 92.2%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.80 56.0 6.04e-01 75.3% 88.9%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 59.0 5.84e-01 77.9% 87.5%
3vnxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 56.0 4.11e-01 79.2% 29.2%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.79 59.0 4.20e-01 79.2% 32.0%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.79 59.0 5.40e-01 77.9% 61.9%
3ehfB01 6.10.250.2870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 59.0 5.25e-01 77.9% 78.8%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 59.0 5.28e-01 79.2% 60.4%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.77 58.0 4.52e-01 80.5% 39.2%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 54.0 4.90e-01 74.0% 56.7%
3c5iA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.77 52.0 3.52e-01 70.1% 20.4%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.77 58.0 5.00e-01 79.2% 54.4%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 55.0 3.81e-01 77.9% 23.7%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 56.0 5.90e-01 77.9% 97.1%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 57.0 5.72e-01 80.5% 82.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 49.0 5.53e-01 79.2% 87.9%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 56.0 5.14e-01 79.2% 59.8%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 51.0 5.27e-01 79.2% 73.0%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 55.0 5.68e-01 81.8% 83.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 52.0 4.88e-01 81.8% 59.8%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 52.0 5.58e-01 72.7% 88.9%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 54.0 5.49e-01 80.5% 79.7%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 52.0 5.65e-01 79.2% 90.3%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 48.0 4.80e-01 79.2% 65.4%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.73 61.0 3.88e-01 92.2% 36.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 5.46e-01 77.9% 86.2%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.71 52.0 4.32e-01 80.5% 43.3%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.71 53.0 5.09e-01 80.5% 70.0%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 51.0 5.52e-01 77.9% 93.8%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 52.0 5.28e-01 80.5% 80.5%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.70 48.0 5.24e-01 79.2% 91.7%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 55.0 4.10e-01 88.3% 60.6%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 52.0 5.15e-01 83.1% 86.4%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.67 59.0 4.84e-01 98.7% 68.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 46.0 4.75e-01 74.0% 82.2%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.66 48.0 5.21e-01 87.0% 98.4%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.37e-01 79.2% 57.9%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 50.0 3.89e-01 80.5% 66.7%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 57.0 4.21e-01 97.4% 77.5%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 51.0 4.78e-01 87.0% 79.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.65 48.0 4.72e-01 88.3% 72.9%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 45.0 4.64e-01 85.7% 78.1%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 55.0 4.21e-01 97.4% 82.4%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 46.0 4.56e-01 80.5% 74.1%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 53.0 4.68e-01 92.2% 81.7%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 3.98e-01 79.2% 53.6%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 54.0 4.76e-01 97.4% 82.7%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 44.0 3.68e-01 77.9% 99.2%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.59 51.0 3.28e-01 100.0% 74.8%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 51.0 4.06e-01 100.0% 88.8%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 48.0 4.11e-01 92.2% 71.8%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.50 38.0 4.07e-01 98.7% 100.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009623 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.90 67.0 7.30e-01 77.9% 92.3%
3171363 605.8.1.2 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 0.87 59.0 6.91e-01 71.4% 98.2%
3184698 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.87 67.0 6.29e-01 80.5% 76.7%
4210734 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.86 65.0 5.81e-01 80.5% 58.1%
3945531 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.85 61.0 6.40e-01 74.0% 90.0%
3585354 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 65.0 6.19e-01 80.5% 68.9%
3595968 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.85 61.0 6.11e-01 75.3% 81.2%
4406905 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 59.0 6.18e-01 80.5% 78.6%
3626229 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.85 62.0 5.96e-01 79.2% 68.2%
3929573 192.8.1.395 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHDCT2 0.85 60.0 5.84e-01 77.9% 67.1%
3898292 192.7.1.47 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CHDCT2 0.84 61.0 5.73e-01 77.9% 64.4%
3171100 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.84 59.0 5.40e-01 74.0% 68.0%
5084013 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.83 59.0 5.19e-01 74.0% 51.8%
3231045 101.1.1.117 alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.83 60.0 5.35e-01 77.9% 55.2%
4315986 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.83 59.0 5.60e-01 77.9% 63.3%
3541678 101.1.1.117 alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.82 59.0 5.52e-01 77.9% 61.1%
3936516 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.82 62.0 4.79e-01 80.5% 39.4%
4507542 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.82 59.0 5.61e-01 79.2% 64.4%
3167271 192.8.1.385 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med11 0.82 62.0 6.20e-01 80.5% 77.5%
3944240 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 59.0 5.56e-01 79.2% 64.4%
4619538 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 62.0 5.36e-01 80.5% 60.0%
3766182 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 61.0 4.90e-01 80.5% 86.2%
3298709 605.1.1.141 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Rx_N 0.80 63.0 5.34e-01 84.4% 63.2%
4937604 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 60.0 5.15e-01 79.2% 53.0%
4156473 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.79 57.0 5.28e-01 79.2% 61.1%
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.79 59.0 5.22e-01 79.2% 68.2%
4479045 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 53.0 3.75e-01 70.1% 99.1%
3298167 5086.1.1.62 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › XH 0.78 59.0 4.83e-01 80.5% 44.3%
4129922 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 56.0 5.12e-01 79.2% 58.0%
149872 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.77 53.0 5.32e-01 80.5% 69.6%
5045370 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 57.0 6.38e-01 83.1% 100.0%
3802266 605.1.1.85 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › XH 0.76 57.0 4.63e-01 80.5% 42.8%
3674356 5069.1.3.13 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › TB2_DP1_HVA22 0.75 63.0 6.26e-01 90.9% 85.0%
3794577 3331.1.1.14 a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › CHDCT2 0.75 54.0 5.27e-01 77.9% 69.4%
3459951 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 55.0 4.86e-01 79.2% 54.5%
4023210 192.29.1.102 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fung_rhodopsin 0.74 58.0 4.51e-01 83.1% 78.1%
3754907 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.73 52.0 5.00e-01 77.9% 64.4%
3700999 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.73 50.0 4.77e-01 71.4% 61.1%
4372535 3683.1.1.0 0.72 64.0 4.75e-01 97.4% 78.4%
4043561 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 49.0 4.35e-01 70.1% 73.6%
3988454 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.72 54.0 5.64e-01 83.1% 97.1%
3618651 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 52.0 5.07e-01 80.5% 71.8%
3616727 603.1.1.98 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.70 60.0 4.31e-01 92.2% 76.2%
4982959 3922.1.1.357 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.70 49.0 4.56e-01 74.0% 57.0%
3732397 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.70 51.0 4.44e-01 77.9% 83.3%
3819961 3291.1.1.225 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › AAA_lid_At3g28540 0.69 51.0 4.36e-01 80.5% 71.5%
3981576 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 57.0 4.26e-01 94.8% 78.5%
3535346 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.68 51.0 3.16e-01 80.5% 13.9%