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OQ359888.1__WDR21990.1__PJM43_0063__00063

Bact-Vir

OQ359888.1__WDR21990.1__PJM43_0063__00063

Identity

Accession:
OQ359888 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Salmonella_phage_vB_SenS_UTK0008

TaxID: 3028907

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-58
PDB
Domain cluster: rep: OQ689084.1__WIL01705.1__CLOJGIHB_00025__00025__D21-67
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.36e-01 70.0% 58.6%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.65 52.0 4.75e-01 88.0% 72.7%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 48.0 4.54e-01 90.0% 75.0%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.59 44.0 2.89e-01 82.0% 28.6%
3zo9B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 37.0 3.11e-01 70.0% 42.1%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 38.0 2.51e-01 80.0% 26.1%
7b5tC01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 41.0 3.71e-01 92.0% 98.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593793 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 47.0 4.70e-01 70.0% 68.0%
4519877 3529.1.1.4 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.71 46.0 3.99e-01 70.0% 42.5%
2172423 3529.1.1.4 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.69 45.0 4.56e-01 70.0% 68.0%
3785385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 4.80e-01 96.0% 75.6%
4578190 2002.1.1.42 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.68 58.0 3.36e-01 100.0% 16.5%
4960524 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.99e-01 78.0% 100.0%
5015962 375.1.1.64 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.62 44.0 4.46e-01 76.0% 96.0%
5036474 375.12.1.1 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C 0.61 52.0 4.22e-01 96.0% 73.7%
3595803 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 50.0 4.84e-01 98.0% 94.8%
4349964 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.60 47.0 3.90e-01 90.0% 90.5%
3922996 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.59 46.0 3.52e-01 88.0% 62.4%
5017094 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.20e-01 84.0% 72.7%
5039313 3769.1.1.0 ↗ 0.57 42.0 4.30e-01 88.0% 97.8%
3266678 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.57 32.0 2.91e-01 74.0% 41.5%
5074538 375.1.3.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.56 42.0 4.04e-01 86.0% 91.7%
4442768 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.56 33.0 3.02e-01 74.0% 44.6%
4275730 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.56 45.0 3.38e-01 96.0% 38.6%
5005187 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 39.0 2.55e-01 78.0% 64.8%
4002590 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.52 39.0 3.55e-01 100.0% 58.3%
4969647 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.52 39.0 3.12e-01 86.0% 38.2%
3619241 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.52 31.0 2.91e-01 80.0% 46.9%
4093322 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.51 36.0 3.28e-01 96.0% 53.4%
5032144 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 37.0 2.60e-01 84.0% 41.5%
3516802 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.51 33.0 3.56e-01 78.0% 85.0%
3489994 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.88e-01 96.0% 82.0%