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OQ361773.1__WDS61561.1__X__00019
Bact-VirOQ361773.1__WDS61561.1__X__00019
Identity
- Accession:
- OQ361773 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Taxonomy
TaxID: 3020854
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-97
Domain cluster:
rep: MT161459.1__QIW87046.1__AHP1_2151__00215__D2-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25693.2 best | Phage_Y01A | 48.7 | 1.40e-12 | 99.0% | 96.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 31.0 | 3.06e-01 | 84.4% | 39.2% |
| 3g8qA02 | 3.30.70.1940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 32.0 | 3.43e-01 | 93.8% | 62.5% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 3.46e-01 | 90.6% | 61.8% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.13e-01 | 91.7% | 53.9% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.52 | 41.0 | 3.37e-01 | 89.6% | 78.9% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.51 | 37.0 | 4.13e-01 | 100.0% | 100.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.26e-01 | 99.0% | 63.2% |
| 4q88A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 41.0 | 2.86e-01 | 90.6% | 89.1% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 35.0 | 3.22e-01 | 70.8% | 71.4% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.50 | 28.0 | 3.28e-01 | 100.0% | 83.3% |
| 5aa5E00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.50 | 38.0 | 2.35e-01 | 79.2% | 68.0% |
| 5eb9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.37e-01 | 100.0% | 62.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3889952 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.67 | 29.0 | 3.44e-01 | 100.0% | 57.1% |
| 3603400 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.67 | 34.0 | 3.77e-01 | 88.5% | 60.0% |
| 5023169 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 32.0 | 3.61e-01 | 90.6% | 62.7% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.60 | 51.0 | 3.28e-01 | 93.8% | 92.0% |
| 4648393 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.58 | 35.0 | 3.06e-01 | 100.0% | 38.0% |
| 4450606 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 33.0 | 3.49e-01 | 90.6% | 64.7% |
| 3949260 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.56 | 39.0 | 3.70e-01 | 74.0% | 60.9% |
| 3357805 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.56 | 32.0 | 3.53e-01 | 85.4% | 70.7% |
| 3702588 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.55 | 39.0 | 4.06e-01 | 99.0% | 77.8% |
| 4448554 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.55 | 32.0 | 3.25e-01 | 90.6% | 57.9% |
| 3929069 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.53 | 44.0 | 3.39e-01 | 90.6% | 91.4% |
| 3729461 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 31.0 | 2.63e-01 | 81.2% | 34.4% |
| 5054484 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.52 | 24.0 | 2.73e-01 | 74.0% | 54.3% |
| 3694899 | 5069.1.1.71 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF3176 | 0.51 | 36.0 | 2.91e-01 | 72.9% | 91.0% |
| 4989412 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 35.0 | 2.62e-01 | 70.8% | 87.9% |
| 3902398 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.51 | 27.0 | 2.59e-01 | 76.0% | 41.7% |