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OQ361773.1__WDS61665.1__X__00123

Bact-Vir

OQ361773.1__WDS61665.1__X__00123

Identity

Accession:
OQ361773 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muldoonvirus› Cronobacter_phage_vB_Cdu_VP8

TaxID: 3020854

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-61
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 68.0 6.54e-01 95.8% 81.5%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.74 47.0 5.25e-01 75.0% 91.2%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 64.0 5.27e-01 97.9% 93.0%
1m1jB03 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 39.0 2.75e-01 100.0% 18.8%
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 49.0 5.37e-01 79.2% 100.0%
2ysmA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 45.0 3.51e-01 81.2% 31.5%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 43.0 4.23e-01 75.0% 69.2%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.61 42.0 3.44e-01 70.8% 78.4%
4ccgY00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 48.0 4.38e-01 95.8% 65.7%
1d2kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 40.0 2.49e-01 79.2% 14.9%
4ntcA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 2.94e-01 91.7% 88.1%
5vakA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 45.0 2.63e-01 93.8% 18.9%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.53 46.0 2.89e-01 100.0% 60.2%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 34.0 3.39e-01 93.8% 57.4%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 45.0 2.73e-01 97.9% 90.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.51 37.0 3.36e-01 83.3% 84.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.97 73.0 7.99e-01 79.2% 95.0%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.88 68.0 6.59e-01 81.2% 80.8%
4013051 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 76.0 6.16e-01 100.0% 98.8%
3735240 376.1.1.114 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.78 60.0 5.59e-01 93.8% 66.7%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.78 70.0 5.65e-01 100.0% 94.4%
4022452 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.78 71.0 5.40e-01 100.0% 92.4%
3607247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 52.0 5.90e-01 79.2% 97.1%
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 69.0 5.65e-01 100.0% 91.8%
3395505 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 55.0 5.66e-01 85.4% 82.2%
3268530 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 58.0 6.24e-01 93.8% 100.0%
8199 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 47.0 5.28e-01 75.0% 93.9%
3435304 376.1.1.52 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.73 55.0 5.04e-01 93.8% 61.5%
4990133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 52.0 5.04e-01 79.2% 69.1%
3818617 376.1.1.103 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 0.71 53.0 5.15e-01 89.6% 72.7%
3412435 377.1.1.18 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD 0.70 59.0 5.00e-01 95.8% 90.0%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.68 51.0 5.39e-01 85.4% 97.5%
4359679 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.67 54.0 4.83e-01 91.7% 62.9%
5033522 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 57.0 5.69e-01 100.0% 96.0%
4957186 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 45.0 4.49e-01 79.2% 68.0%
3732738 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 54.0 5.08e-01 95.8% 73.3%
3298356 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 41.0 4.65e-01 70.8% 100.0%
3701455 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 47.0 4.57e-01 79.2% 76.4%
5019399 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 53.0 5.12e-01 91.7% 100.0%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 47.0 4.96e-01 79.2% 95.0%
5049855 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 47.0 4.49e-01 87.5% 68.3%
3336254 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 47.0 4.86e-01 85.4% 88.9%
3255059 375.1.1.297 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-MYND 0.61 40.0 4.47e-01 75.0% 100.0%
3385531 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.60 46.0 4.71e-01 85.4% 88.9%
4562058 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.60 45.0 4.60e-01 83.3% 86.7%
4985634 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 46.0 4.26e-01 85.4% 76.2%
3412477 243.3.1.53 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.57 40.0 2.98e-01 93.8% 29.8%
3319227 1021.1.1.2 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.57 40.0 3.51e-01 72.9% 52.9%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.57 39.0 2.92e-01 72.9% 42.4%
3300469 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.56 40.0 4.04e-01 85.4% 76.0%
5031930 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.56 42.0 4.48e-01 81.2% 100.0%
3913312 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.55 42.0 4.38e-01 91.7% 93.3%
3264583 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 36.0 3.79e-01 77.1% 100.0%
5071141 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 42.0 4.31e-01 85.4% 93.3%
3907975 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.53 41.0 4.23e-01 91.7% 97.8%
3411509 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 39.0 4.04e-01 85.4% 91.1%
5010149 377.1.1.131 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C 0.52 37.0 3.87e-01 83.3% 95.0%
3540286 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.52 35.0 3.82e-01 83.3% 97.1%