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OQ361773.1__WDS61675.1__X__00133

Bact-Vir

OQ361773.1__WDS61675.1__X__00133

Identity

Accession:
OQ361773 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muldoonvirus› Cronobacter_phage_vB_Cdu_VP8

TaxID: 3020854

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-71
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 51.0 5.48e-01 84.7% 96.0%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 5.02e-01 96.6% 100.0%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 45.0 4.82e-01 93.2% 97.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 42.0 3.77e-01 74.6% 53.2%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.61 48.0 4.29e-01 89.8% 74.2%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.61 42.0 3.74e-01 72.9% 100.0%
3mekA04 1.25.40.970 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 45.0 4.20e-01 86.4% 75.0%
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.83e-01 86.4% 100.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.59 45.0 3.77e-01 86.4% 89.0%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.57 46.0 4.45e-01 96.6% 95.6%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.42e-01 96.6% 98.2%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 42.0 3.49e-01 83.1% 63.6%
4jxjA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.56 42.0 4.17e-01 88.1% 76.9%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 48.0 4.39e-01 100.0% 82.3%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.55 49.0 4.85e-01 100.0% 100.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 3.64e-01 78.0% 62.3%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.77e-01 86.4% 59.9%
1wljA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 36.0 2.65e-01 72.9% 44.6%
5v07Z02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 39.0 3.74e-01 100.0% 69.2%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 40.0 3.41e-01 88.1% 57.1%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.51 40.0 2.95e-01 86.4% 67.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957420 3290.1.1.0 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B 0.76 52.0 4.66e-01 100.0% 52.5%
3885749 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.69 59.0 5.49e-01 96.6% 78.7%
5074223 622.5.1.0 ↗ alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 0.67 34.0 2.90e-01 76.3% 33.3%
3929086 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.67 52.0 5.31e-01 91.5% 92.7%
4836886 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.66 41.0 3.60e-01 71.2% 42.5%
3468869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.52e-01 98.3% 100.0%
3193553 101.1.2.212 ↗ alpha arrays › HTH › HTH › winged helix domain › Cac1_C 0.65 57.0 5.53e-01 100.0% 100.0%
3591633 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.65 49.0 4.11e-01 84.7% 51.8%
3463735 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 53.0 5.50e-01 98.3% 100.0%
4988334 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.64 53.0 4.67e-01 94.9% 77.8%
3810015 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.64 46.0 4.32e-01 78.0% 69.3%
3525009 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.57 50.0 2.99e-01 100.0% 66.1%
3708254 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 48.0 4.79e-01 100.0% 100.0%
3225449 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.56 44.0 4.22e-01 96.6% 96.0%
5055834 3009.2.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain 0.55 43.0 4.03e-01 91.5% 85.0%
4034210 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.55 37.0 3.51e-01 81.4% 58.6%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 4.32e-01 91.5% 88.3%
4141594 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.54 38.0 3.64e-01 79.7% 64.0%
3694907 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 45.0 2.71e-01 96.6% 39.3%
5029911 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 46.0 4.65e-01 96.6% 96.6%
3465116 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.64e-01 93.2% 22.0%
4290005 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.51 36.0 3.71e-01 93.2% 76.4%
4458432 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.51 37.0 3.54e-01 81.4% 64.0%
4026345 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 41.0 3.40e-01 94.9% 88.7%