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OQ362005.1__WCX68661.1__X__00036

Bact-Vir

OQ362005.1__WCX68661.1__X__00036

Identity

Accession:
OQ362005 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.77 58.0 5.19e-01 92.0% 58.6%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 63.0 4.75e-01 94.0% 44.6%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.74 55.0 4.28e-01 80.0% 43.9%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 66.0 4.57e-01 100.0% 50.3%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 63.0 4.16e-01 100.0% 77.0%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.72 48.0 3.63e-01 70.0% 82.0%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.69 47.0 4.38e-01 70.0% 62.3%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 54.0 3.97e-01 90.0% 32.9%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.68 60.0 3.65e-01 100.0% 50.8%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.67 53.0 5.33e-01 88.0% 100.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.67 51.0 4.22e-01 86.0% 46.7%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.67 55.0 3.49e-01 94.0% 66.7%
2o5vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 57.0 3.94e-01 100.0% 54.1%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 57.0 4.29e-01 100.0% 77.9%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.64 55.0 4.33e-01 100.0% 50.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.63 54.0 4.40e-01 96.0% 69.1%
5e1qB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 54.0 3.39e-01 98.0% 69.5%
2okxA04 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.63 54.0 4.47e-01 98.0% 89.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.63 54.0 4.67e-01 100.0% 79.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 3.39e-01 76.0% 35.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 3.83e-01 100.0% 44.8%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.62 52.0 4.03e-01 96.0% 49.6%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 40.0 2.87e-01 74.0% 22.4%
4nvrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 52.0 3.24e-01 98.0% 38.4%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 3.59e-01 100.0% 52.4%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.60 51.0 4.42e-01 96.0% 78.5%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 48.0 4.07e-01 94.0% 81.3%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 49.0 3.40e-01 90.0% 33.3%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.60 44.0 3.11e-01 90.0% 23.2%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 3.97e-01 88.0% 93.8%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 48.0 3.73e-01 98.0% 55.6%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.75e-01 90.0% 85.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4256135 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.83 76.0 4.97e-01 100.0% 26.8%
4243044 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.79 68.0 4.64e-01 100.0% 28.2%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.77 60.0 4.88e-01 100.0% 45.3%
3853086 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.77 60.0 3.55e-01 92.0% 12.0%
3851887 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.74 59.0 4.12e-01 88.0% 30.0%
3231619 12.3.1.26 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N 0.74 65.0 4.14e-01 100.0% 66.1%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.73 53.0 4.80e-01 94.0% 57.1%
3979195 274.1.1.35 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.72 65.0 4.76e-01 100.0% 44.0%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 54.0 3.45e-01 100.0% 16.5%
5004981 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.71 51.0 4.74e-01 92.0% 60.0%
3943357 274.1.1.35 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.70 63.0 5.22e-01 100.0% 64.7%
4938320 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.70 61.0 3.55e-01 100.0% 84.8%
4927943 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 55.0 4.97e-01 88.0% 70.0%
3288144 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.69 61.0 4.91e-01 100.0% 68.4%
3959753 3513.1.1.0 a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.68 49.0 3.54e-01 90.0% 26.2%
3721633 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 56.0 4.76e-01 90.0% 96.2%
3701349 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 56.0 3.24e-01 90.0% 31.1%
3953238 3513.1.1.2 a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › LppA 0.68 49.0 3.53e-01 90.0% 26.0%
3618896 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 58.0 5.43e-01 100.0% 78.1%
3511356 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.67 58.0 4.60e-01 100.0% 60.0%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 57.0 4.80e-01 92.0% 65.0%
185415 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.67 51.0 4.22e-01 86.0% 46.7%
1310956 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 53.0 3.21e-01 90.0% 12.8%
3645444 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 3.90e-01 86.0% 93.3%
3512816 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.66 53.0 3.20e-01 90.0% 13.1%
3479018 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 57.0 3.33e-01 100.0% 43.0%
3799398 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 55.0 3.87e-01 100.0% 35.2%
3266788 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.64 53.0 3.93e-01 90.0% 36.3%
3934170 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 54.0 4.50e-01 100.0% 61.1%
4464751 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.64 53.0 3.67e-01 100.0% 27.1%
6650 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 55.0 4.03e-01 100.0% 38.8%
3907175 719.1.1.3 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX 0.64 54.0 4.35e-01 96.0% 100.0%
3407647 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.64 53.0 4.93e-01 100.0% 82.4%
3931696 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 54.0 4.34e-01 100.0% 58.1%
2639349 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.63 52.0 4.07e-01 100.0% 89.4%
3403936 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.63 53.0 4.27e-01 100.0% 66.7%
4569026 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.63 52.0 3.70e-01 100.0% 29.4%
3337354 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.63 54.0 4.05e-01 100.0% 90.8%
4012405 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 51.0 3.00e-01 92.0% 10.8%
3738905 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.62 51.0 4.07e-01 92.0% 65.0%
185792 9.17.1.1 beta barrels › Lipocalins/Streptavidin › Lipoprotein YedD › Lipoprotein YedD › YedD 0.62 52.0 4.03e-01 96.0% 49.6%
3797523 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 3.22e-01 74.0% 36.9%
3225818 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.62 52.0 3.35e-01 96.0% 20.8%
3265309 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.62 53.0 3.84e-01 98.0% 50.7%
5010444 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 3.58e-01 72.0% 65.0%
4263827 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.56e-01 98.0% 62.1%
5054481 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.58 49.0 3.95e-01 100.0% 71.4%
5022840 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 45.0 3.80e-01 86.0% 78.8%
682 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 41.0 3.40e-01 98.0% 44.2%
D2 high residues 73-120
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 36.3 7.30e-09 100.0% 74.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 45.0 2.92e-01 100.0% 94.5%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 46.0 2.77e-01 100.0% 70.9%
4mx8C01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 43.0 2.91e-01 83.3% 59.3%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.55e-01 100.0% 41.1%
4i6mD00 6.20.420.10 Special › Other non-globular › Factor Xa Inhibitor › 0.56 36.0 3.56e-01 81.2% 58.5%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.33e-01 100.0% 43.6%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 40.0 2.70e-01 87.5% 54.9%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 34.0 2.51e-01 70.8% 26.2%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 2.85e-01 70.8% 89.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275547 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.80 74.0 5.47e-01 100.0% 51.8%
3563383 3240.1.1.2 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.75 69.0 4.67e-01 100.0% 32.3%
1153578 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.61 36.0 3.25e-01 87.5% 37.1%
3995914 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.57 46.0 3.08e-01 100.0% 84.9%
3592295 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 46.0 3.30e-01 97.9% 46.9%
3938203 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 43.0 2.75e-01 95.8% 41.0%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.55 44.0 2.78e-01 100.0% 31.2%
3938146 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.55 44.0 2.73e-01 95.8% 36.5%
4321860 304.48.1.17 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 0.54 34.0 2.35e-01 75.0% 16.3%
4952838 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 42.0 2.72e-01 93.8% 23.3%
4022589 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.53 43.0 2.91e-01 100.0% 83.6%
3332597 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.53 42.0 2.83e-01 100.0% 80.4%
4025162 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 43.0 3.52e-01 95.8% 51.6%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.51 39.0 2.69e-01 97.9% 67.1%
3589192 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.51 38.0 3.36e-01 83.3% 51.2%
3067454 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.51 40.0 2.71e-01 100.0% 56.7%
10062 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.50 41.0 2.70e-01 97.9% 45.6%
3470394 3382.1.1.1 alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.50 42.0 2.57e-01 100.0% 38.8%