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OQ363659.1WDS62024.1X__00003

Bact-Vir

OQ363659.1__WDS62024.1__X__00003

Identity

Accession:: OQ363659 ↗
Kingdom:: phage

Quality

51.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_D6

TaxID: 3025445

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 131-145_235-309

PDB

D2 medium residues 146-220

PDB

D3 medium residues 531-618

PDB

D4 medium residues 646-706_766-782

PDB

Domain cluster: representative

D5 medium residues 707-719_754-765_783-801_843-876

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wkbA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.65	46.0	4.02e-01	74.4%	65.3%
3uo2B02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.64	43.0	4.26e-01	70.5%	90.5%
4hwhE00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.59	53.0	5.07e-01	97.4%	100.0%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	48.0	4.00e-01	96.2%	60.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3996047	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.61	42.0	4.34e-01	73.1%	98.7%
3605712	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	43.0	4.31e-01	87.2%	98.8%

D6 medium residues 720-753_802-842

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.71	53.0	5.17e-01	80.0%	86.7%
2iw3B01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.61	54.0	3.55e-01	100.0%	25.4%
3c2gA02	1.10.10.1630	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like	0.59	48.0	4.98e-01	97.3%	100.0%
6tblB01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	49.0	4.36e-01	96.0%	75.7%
6wm2P02	1.25.40.150	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain	0.58	48.0	4.33e-01	97.3%	65.1%
3fseB02	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	45.0	3.64e-01	84.0%	88.2%
1dbhA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.57	50.0	3.68e-01	100.0%	62.1%
2w31A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	45.0	3.67e-01	88.0%	59.2%
3nzpB03	1.20.58.930	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	43.0	4.31e-01	81.3%	78.5%
1wjtA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.56	50.0	4.51e-01	100.0%	75.7%
4rflA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.55	47.0	3.54e-01	98.7%	70.4%
6jd6B00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.52	45.0	3.37e-01	98.7%	42.7%
6qdws00	3.90.470.10	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17	0.52	38.0	3.33e-01	98.7%	53.2%
2d9dA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.51	38.0	3.68e-01	82.7%	79.8%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.51	44.0	4.20e-01	98.7%	84.1%
1iq0A03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.50	38.0	3.38e-01	84.0%	72.4%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4962699	101.1.2.924 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7342	0.73	44.0	3.35e-01	100.0%	27.3%
3393075	601.7.1.44 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › MYCBPAP	0.66	48.0	4.80e-01	100.0%	74.7%
4941322	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.65	48.0	3.15e-01	100.0%	19.0%
4959463	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.64	47.0	4.66e-01	80.0%	90.0%
3243495	101.1.1.289 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB	0.64	34.0	3.98e-01	100.0%	72.7%
4042478	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.63	50.0	3.02e-01	100.0%	12.4%
3319492	3923.1.1.1 ↗	alpha bundles › Mitotic chromosome determinant-related protein N-terminal domain › Mitotic chromosome determinant-related protein N-terminal domain › Mitotic chromosome determinant-related protein N-terminal domain › Rad21_Rec8_N	0.62	48.0	4.74e-01	97.3%	77.5%
3167054	109.4.1.266 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG	0.61	54.0	3.61e-01	100.0%	25.9%
3499180	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	55.0	3.83e-01	100.0%	37.1%
3410260	109.4.1.3503 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28415, PF29875	0.60	52.0	3.43e-01	100.0%	22.7%
3663066	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.59	52.0	4.77e-01	100.0%	76.0%
3454879	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	52.0	4.53e-01	100.0%	78.3%
3911405	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.57	51.0	3.87e-01	100.0%	43.3%
4012279	109.4.1.623 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1	0.56	50.0	3.40e-01	100.0%	30.2%
3577291	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	49.0	4.14e-01	100.0%	62.3%
3789033	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	47.0	4.42e-01	100.0%	85.3%
4969357	2006.1.4.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like	0.55	47.0	3.74e-01	94.7%	45.8%
None	—		0.55	50.0	3.30e-01	100.0%	26.3%
3243228	109.4.1.1323 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1	0.54	48.0	3.18e-01	100.0%	24.8%
3712981	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	48.0	3.40e-01	100.0%	46.3%
5067905	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.53	45.0	3.33e-01	100.0%	64.9%
4610814	185.1.1.1 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl	0.52	42.0	3.72e-01	89.3%	73.0%
3962993	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.52	45.0	3.35e-01	100.0%	48.3%