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OQ363659.1__WDS62381.1__X__00360
Bact-VirOQ363659.1__WDS62381.1__X__00360
Identity
- Accession:
- OQ363659 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-97_201-274
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 26.0 | 3.40e-01 | 79.5% | 56.7% |
| 3bxjA02 | 1.10.506.20 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › | 0.53 | 26.0 | 3.14e-01 | 100.0% | 70.4% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.53 | 34.0 | 3.57e-01 | 89.4% | 71.0% |
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.51 | 33.0 | 4.07e-01 | 74.5% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610049 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.60 | 55.0 | 4.30e-01 | 100.0% | 90.7% |
| 3596097 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.60 | 55.0 | 4.36e-01 | 100.0% | 91.6% |
| 3440148 | 611.7.1.2 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › MCAfunc | 0.54 | 35.0 | 3.77e-01 | 82.6% | 76.3% |
| 3281805 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 38.0 | 4.14e-01 | 100.0% | 91.9% |
| 3606036 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.51 | 36.0 | 3.99e-01 | 82.6% | 88.5% |
| 4949602 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.51 | 30.0 | 3.83e-01 | 96.9% | 100.0% |
| 3718416 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.50 | 40.0 | 4.06e-01 | 100.0% | 85.8% |
D2
high
residues 106-197
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 3.87e-01 | 75.0% | 77.4% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 37.0 | 3.78e-01 | 93.5% | 69.6% |
| 3rh2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 3.54e-01 | 95.7% | 65.1% |
D3
high
residues 293-458
Domain cluster:
rep: LC680885.1__BDE75759.1__X__00221__D247-427
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00623.26 best | RNA_pol_Rpb1_2 | 29.2 | 1.40e-06 | 57.2% | 31.9% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA03 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.91 | 55.0 | 7.10e-01 | 91.0% | 99.0% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.88 | 73.0 | 7.78e-01 | 90.4% | 97.9% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.83 | 42.0 | 5.98e-01 | 83.1% | 100.0% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 42.0 | 5.89e-01 | 81.9% | 98.8% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.82 | 43.0 | 5.83e-01 | 84.3% | 94.6% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.79 | 61.0 | 6.63e-01 | 97.6% | 93.7% |
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.77 | 39.0 | 5.45e-01 | 80.7% | 98.8% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.77 | 46.0 | 5.78e-01 | 83.1% | 96.1% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.70 | 43.0 | 5.28e-01 | 84.3% | 95.4% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.68 | 39.0 | 5.09e-01 | 80.7% | 100.0% |
| 4jcwA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.67 | 41.0 | 5.16e-01 | 82.5% | 99.0% |
| 1n10A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.61 | 40.0 | 4.77e-01 | 80.7% | 96.5% |
| 1ve2B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.60 | 30.0 | 3.49e-01 | 90.4% | 64.3% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 24.0 | 3.50e-01 | 80.1% | 100.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.51 | 37.0 | 3.28e-01 | 73.5% | 73.2% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2968637 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.94 | 91.0 | 9.14e-01 | 100.0% | 98.8% |
| 2886100 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.93 | 89.0 | 8.38e-01 | 100.0% | 84.5% |
| 4026183 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.91 | 79.0 | 8.29e-01 | 97.0% | 98.0% |
| 4887355 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.91 | 53.0 | 6.20e-01 | 89.8% | 79.0% |
| 3670775 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.90 | 60.0 | 7.14e-01 | 99.4% | 94.2% |
| 4886549 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.90 | 78.0 | 8.10e-01 | 99.4% | 96.1% |
| 3966248 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.89 | 59.0 | 7.12e-01 | 99.4% | 96.5% |
| 3684523 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.89 | 60.0 | 6.94e-01 | 99.4% | 90.4% |
| 3596090 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.89 | 60.0 | 7.13e-01 | 97.0% | 95.0% |
| 4129914 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.88 | 79.0 | 7.10e-01 | 100.0% | 71.6% |
| 1746098 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.87 | 77.0 | 7.71e-01 | 97.6% | 90.5% |
| 4890084 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.85 | 58.0 | 6.74e-01 | 100.0% | 93.4% |
| 5076635 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.85 | 44.0 | 6.20e-01 | 84.3% | 100.0% |
| 5041263 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 44.0 | 6.11e-01 | 81.9% | 100.0% |
| 5037727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 43.0 | 6.08e-01 | 83.1% | 100.0% |
| 4986590 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 43.0 | 6.02e-01 | 84.3% | 100.0% |
| 4445483 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.83 | 43.0 | 6.01e-01 | 83.7% | 100.0% |
| 4946804 | 1.1.2.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N | 0.82 | 43.0 | 5.99e-01 | 83.7% | 100.0% |
| 4941448 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 43.0 | 5.98e-01 | 83.7% | 100.0% |
| 5028227 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.82 | 43.0 | 5.94e-01 | 80.1% | 100.0% |
| 4263053 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 42.0 | 5.92e-01 | 81.9% | 100.0% |
| 5042283 | 208.1.1.56 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin | 0.81 | 47.0 | 3.75e-01 | 81.9% | 31.5% |
| 1883479 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.81 | 43.0 | 5.77e-01 | 83.7% | 95.6% |
| 3725766 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 46.0 | 6.11e-01 | 84.9% | 100.0% |
| 4346976 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.81 | 42.0 | 5.78e-01 | 84.3% | 98.8% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 42.0 | 5.85e-01 | 83.1% | 100.0% |
| 5083684 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.80 | 37.0 | 5.55e-01 | 80.1% | 100.0% |
| 3783660 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 44.0 | 5.68e-01 | 83.7% | 92.0% |
| 3186315 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 46.0 | 5.89e-01 | 81.9% | 97.0% |
| 3360997 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.78 | 61.0 | 6.50e-01 | 99.4% | 91.0% |
| 5060748 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 50.0 | 6.13e-01 | 97.6% | 98.2% |
| 3519457 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.77 | 44.0 | 5.77e-01 | 86.1% | 100.0% |
| 3255733 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 46.0 | 5.81e-01 | 83.7% | 100.0% |
| 4280405 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 41.0 | 5.56e-01 | 83.7% | 100.0% |
| 3412967 | 1.1.2.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N | 0.75 | 41.0 | 5.55e-01 | 81.3% | 100.0% |
| 4203264 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.75 | 43.0 | 5.66e-01 | 81.3% | 100.0% |
| 4890564 | 101.1.2.869 ↗ | alpha arrays › HTH › HTH › winged helix domain › IML1_N | 0.75 | 38.0 | 5.22e-01 | 79.5% | 98.8% |
| None | — | 0.74 | 41.0 | 5.40e-01 | 83.7% | 96.8% | |
| 4048983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 44.0 | 5.42e-01 | 84.9% | 98.1% |
| 5081033 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 67.0 | 6.27e-01 | 100.0% | 91.5% |
| 3509068 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.71 | 63.0 | 5.82e-01 | 92.2% | 89.5% |
| 3183266 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.70 | 52.0 | 5.89e-01 | 92.8% | 97.7% |
| 4015760 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 65.0 | 6.07e-01 | 96.4% | 94.9% |
| 5058903 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.70 | 67.0 | 6.33e-01 | 100.0% | 96.3% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.70 | 66.0 | 6.10e-01 | 99.4% | 93.2% |
| 3836120 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.70 | 65.0 | 6.11e-01 | 97.6% | 98.5% |
| 349867 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.69 | 44.0 | 5.26e-01 | 86.7% | 93.8% |
| 4871383 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.69 | 40.0 | 5.15e-01 | 83.1% | 100.0% |
| 3187087 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.69 | 50.0 | 5.79e-01 | 91.0% | 99.2% |
| 4948679 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.69 | 66.0 | 5.11e-01 | 100.0% | 81.0% |
| 3374701 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.69 | 65.0 | 6.34e-01 | 99.4% | 93.3% |
| 3735360 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 43.0 | 5.29e-01 | 85.5% | 96.4% |
| 4943460 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.68 | 64.0 | 6.19e-01 | 98.8% | 94.6% |
| 4299713 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 41.0 | 5.09e-01 | 80.7% | 95.2% |
| 4419943 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.67 | 39.0 | 4.99e-01 | 82.5% | 97.0% |
| 3976753 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.66 | 43.0 | 4.60e-01 | 87.3% | 74.0% |
| 3627366 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 38.0 | 4.84e-01 | 84.9% | 98.0% |
| 4013955 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.62 | 44.0 | 5.06e-01 | 84.9% | 97.6% |
| 4370157 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.60 | 43.0 | 4.66e-01 | 93.4% | 86.0% |
| 5056546 | 3349.1.1.3 ↗ | a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat | 0.59 | 52.0 | 3.64e-01 | 91.6% | 36.8% |
| 3342891 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 37.0 | 4.07e-01 | 80.7% | 78.5% |
| 4954178 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.58 | 55.0 | 3.86e-01 | 100.0% | 39.6% |
| 4961166 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.57 | 55.0 | 4.71e-01 | 100.0% | 74.3% |
| 5030460 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.56 | 53.0 | 3.67e-01 | 100.0% | 36.1% |
| 4498374 | 1.1.2.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat | 0.55 | 53.0 | 4.49e-01 | 99.4% | 70.4% |
| 3688059 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 48.0 | 4.89e-01 | 98.8% | 92.7% |
| 3175987 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 49.0 | 4.51e-01 | 100.0% | 96.7% |