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OQ376695.1__WDS61923.1__YP6_00117__00117

Bact-Vir

OQ376695.1__WDS61923.1__YP6_00117__00117

Identity

Accession:
OQ376695 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vequintavirus› Escherichia_phage_YP-6

TaxID: 3020453

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 6.44e-01 85.9% 90.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 56.0 5.76e-01 84.5% 78.8%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 6.22e-01 80.3% 93.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.49e-01 81.7% 75.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.73e-01 83.1% 84.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 48.0 5.82e-01 73.2% 97.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 5.73e-01 73.2% 93.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 49.0 5.56e-01 95.8% 90.4%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.69e-01 74.6% 94.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 5.80e-01 87.3% 91.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 6.01e-01 90.1% 90.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.12e-01 90.1% 67.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 57.0 5.41e-01 81.7% 75.3%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 59.0 5.36e-01 90.1% 94.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 57.0 4.47e-01 87.3% 57.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.48e-01 77.5% 95.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 49.0 5.23e-01 74.6% 93.3%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 49.0 4.80e-01 76.1% 80.8%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 52.0 4.25e-01 95.8% 45.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 44.0 4.94e-01 77.5% 94.1%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 46.0 4.64e-01 77.5% 97.3%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.34e-01 76.1% 84.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 48.0 4.02e-01 97.2% 49.6%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 50.0 3.21e-01 90.1% 23.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 5.04e-01 95.8% 92.5%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 50.0 4.79e-01 93.0% 84.3%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 40.0 3.81e-01 73.2% 93.3%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.58 40.0 4.03e-01 98.6% 73.2%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.42e-01 93.0% 88.2%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.39e-01 97.2% 90.8%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 43.0 3.40e-01 90.1% 54.7%
5a4eC00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 45.0 3.17e-01 95.8% 37.3%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.71e-01 77.5% 76.7%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 36.0 3.14e-01 76.1% 84.6%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 4.01e-01 95.8% 97.7%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3199259 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.84 66.0 6.88e-01 88.7% 89.2%
3222146 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 57.0 5.98e-01 80.3% 76.9%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.84 60.0 6.70e-01 90.1% 96.4%
3274582 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.83 57.0 6.46e-01 93.0% 92.7%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.83 56.0 5.89e-01 81.7% 76.9%
3922679 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.82 55.0 6.39e-01 83.1% 98.0%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 59.0 5.50e-01 83.1% 62.4%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.82 58.0 5.68e-01 84.5% 69.3%
3329059 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.82 55.0 6.36e-01 76.1% 98.0%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.82 59.0 5.50e-01 88.7% 62.4%
3834390 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 55.0 6.40e-01 78.9% 100.0%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 5.44e-01 94.4% 58.9%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.81 56.0 3.39e-01 81.7% 11.4%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.80 59.0 4.42e-01 93.0% 33.3%
3579591 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.80 56.0 6.21e-01 80.3% 92.7%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.80 56.0 6.24e-01 81.7% 94.5%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 60.0 5.54e-01 94.4% 63.3%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.79 58.0 6.26e-01 85.9% 91.7%
3393347 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 59.0 5.42e-01 93.0% 62.2%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 57.0 5.82e-01 91.5% 77.1%
3622052 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 58.0 5.46e-01 93.0% 64.7%
3317030 4.1.1.366 ↗ beta barrels › SH3 › SH3 › SH3 › PF26738 0.79 60.0 6.43e-01 88.7% 95.0%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 63.0 5.74e-01 93.0% 66.7%
3584364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 50.0 5.81e-01 76.1% 92.0%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.78 55.0 4.69e-01 85.9% 47.3%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.28e-01 87.3% 89.2%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 59.0 5.42e-01 93.0% 63.3%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.78 57.0 5.10e-01 85.9% 56.8%
3577224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 61.0 5.63e-01 93.0% 66.7%
3597690 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.09e-01 90.1% 84.3%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.81e-01 90.1% 77.3%
4105328 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.77 54.0 5.63e-01 80.3% 80.0%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.77 57.0 5.66e-01 90.1% 74.7%
4002985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.18e-01 87.3% 93.3%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.77 55.0 5.33e-01 87.3% 67.5%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.26e-01 95.8% 85.3%
3195050 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 59.0 5.30e-01 94.4% 61.1%
3609629 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 60.0 5.37e-01 93.0% 62.1%
3738126 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 57.0 5.25e-01 91.5% 62.2%
3492016 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 56.0 5.14e-01 88.7% 61.1%
3922903 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 56.0 6.01e-01 83.1% 91.7%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 48.0 4.56e-01 77.5% 54.1%
3551576 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.75 60.0 5.89e-01 85.9% 80.0%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.75 57.0 5.89e-01 88.7% 86.4%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.10e-01 91.5% 81.2%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.75 59.0 5.80e-01 90.1% 80.0%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 56.0 5.54e-01 87.3% 76.0%
3753231 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.74 62.0 6.00e-01 90.1% 82.5%
3768346 4.1.1.226 ↗ beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.74 63.0 6.27e-01 93.0% 88.0%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.29e-01 87.3% 67.1%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 57.0 5.05e-01 93.0% 58.0%
3970890 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.74 59.0 6.35e-01 85.9% 100.0%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.65e-01 93.0% 78.7%
3839929 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.73 59.0 6.29e-01 87.3% 98.4%
4531569 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.72 57.0 6.12e-01 83.1% 98.3%
3407821 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 57.0 5.36e-01 93.0% 70.6%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.16e-01 90.1% 32.4%
3519774 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.87e-01 91.5% 56.2%
3414912 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 58.0 5.10e-01 93.0% 60.0%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 59.0 5.73e-01 95.8% 81.2%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.20e-01 93.0% 65.3%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 60.0 5.69e-01 93.0% 77.6%
3672445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 4.76e-01 93.0% 67.6%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.60e-01 95.8% 80.0%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.70 53.0 5.56e-01 84.5% 87.7%
3511337 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 56.0 5.17e-01 93.0% 67.8%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 58.0 4.61e-01 91.5% 44.8%
3706223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.14e-01 91.5% 64.8%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.70 60.0 4.58e-01 93.0% 70.3%
3787586 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 56.0 4.93e-01 94.4% 59.0%
3476179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.16e-01 87.3% 80.0%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.70 59.0 5.95e-01 94.4% 94.4%
3587337 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 55.0 4.34e-01 95.8% 41.3%
3702177 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.21e-01 93.0% 88.0%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.69 59.0 4.57e-01 93.0% 69.3%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 55.0 5.34e-01 87.3% 79.0%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.69 53.0 5.34e-01 81.7% 84.3%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 50.0 4.96e-01 77.5% 84.0%
3398464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.62e-01 77.5% 100.0%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.32e-01 90.1% 81.2%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 58.0 4.44e-01 95.8% 55.6%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.66 56.0 4.73e-01 97.2% 91.2%
3878271 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.66 58.0 4.44e-01 95.8% 53.5%
3792195 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.83e-01 93.0% 65.0%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 57.0 4.38e-01 95.8% 44.5%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.16e-01 84.5% 90.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.64 45.0 4.50e-01 81.7% 70.7%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.64 42.0 4.75e-01 80.3% 98.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 42.0 4.14e-01 78.9% 69.3%
4941936 4.1.1.493 ↗ beta barrels › SH3 › SH3 › SH3 › PF29241 0.52 45.0 4.08e-01 95.8% 96.8%