←Back to structures
OQ376858.1__WFG40916.1__ParaMal1_00032__00032
Bact-VirOQ376858.1__WFG40916.1__ParaMal1_00032__00032
Identity
- Accession:
- OQ376858 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
TaxID: 3032416
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-43
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dnnA00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.76 | 61.0 | 5.78e-01 | 92.5% | 76.0% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 61.0 | 4.85e-01 | 97.5% | 90.7% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.73 | 57.0 | 3.66e-01 | 92.5% | 18.7% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 55.0 | 4.98e-01 | 90.0% | 61.0% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 56.0 | 4.04e-01 | 92.5% | 29.1% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 59.0 | 5.21e-01 | 97.5% | 96.8% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.71 | 61.0 | 4.40e-01 | 100.0% | 61.5% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 55.0 | 4.37e-01 | 92.5% | 43.2% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 53.0 | 4.77e-01 | 90.0% | 60.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 53.0 | 4.35e-01 | 92.5% | 44.9% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 50.0 | 4.11e-01 | 90.0% | 41.8% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 54.0 | 4.73e-01 | 95.0% | 66.7% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 53.0 | 4.01e-01 | 92.5% | 54.1% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 45.0 | 3.93e-01 | 90.0% | 45.3% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 48.0 | 4.47e-01 | 92.5% | 77.6% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 4.60e-01 | 92.5% | 70.7% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 48.0 | 4.31e-01 | 97.5% | 82.4% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.63 | 49.0 | 3.91e-01 | 92.5% | 38.9% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.63 | 49.0 | 3.24e-01 | 90.0% | 99.5% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 51.0 | 3.86e-01 | 100.0% | 59.8% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 48.0 | 2.99e-01 | 95.0% | 21.7% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 47.0 | 4.29e-01 | 97.5% | 75.8% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 47.0 | 3.63e-01 | 100.0% | 61.7% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 46.0 | 3.78e-01 | 90.0% | 45.9% |
| 7dukB01 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 42.0 | 4.22e-01 | 97.5% | 93.5% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 44.0 | 3.45e-01 | 97.5% | 56.6% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 42.0 | 2.95e-01 | 100.0% | 23.2% |
| 2q6fB03 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.57 | 46.0 | 3.59e-01 | 97.5% | 81.0% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.55 | 40.0 | 3.09e-01 | 95.0% | 32.0% |
| 1ciiA03 | 1.10.490.30 | Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin | 0.55 | 46.0 | 3.12e-01 | 97.5% | 37.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 41.0 | 3.56e-01 | 85.0% | 50.8% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.68e-01 | 85.0% | 100.0% |
| 1uhsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 40.0 | 3.71e-01 | 82.5% | 74.1% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.53 | 39.0 | 3.17e-01 | 90.0% | 85.6% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 39.0 | 3.10e-01 | 100.0% | 76.6% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.51 | 36.0 | 3.12e-01 | 90.0% | 43.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3713494 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.80 | 71.0 | 6.05e-01 | 100.0% | 63.1% |
| 3614039 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.78 | 65.0 | 3.59e-01 | 95.0% | 10.8% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 61.0 | 4.71e-01 | 92.5% | 38.9% |
| 3971635 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.76 | 61.0 | 3.39e-01 | 92.5% | 7.2% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.74 | 58.0 | 4.23e-01 | 92.5% | 30.8% |
| 4982777 | 3291.1.1.238 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF7121 | 0.73 | 60.0 | 3.78e-01 | 97.5% | 20.0% |
| 4034201 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.72 | 57.0 | 5.10e-01 | 92.5% | 61.7% |
| 3681643 | 109.4.1.146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load | 0.72 | 60.0 | 3.48e-01 | 100.0% | 15.2% |
| 3889578 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.72 | 56.0 | 4.04e-01 | 92.5% | 29.6% |
| 4457620 | 192.27.1.0 ↗ | alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase | 0.71 | 58.0 | 5.41e-01 | 100.0% | 89.1% |
| 4589656 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.71 | 58.0 | 3.89e-01 | 90.0% | 82.1% |
| 3534511 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.71 | 55.0 | 3.76e-01 | 92.5% | 23.1% |
| 3276108 | 6007.1.1.0 ↗ | extended segments › NHR2 domain-like › NHR2 domain-like › NHR2 domain-like | 0.71 | 54.0 | 4.43e-01 | 92.5% | 43.5% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.70 | 55.0 | 3.79e-01 | 92.5% | 26.2% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.69 | 55.0 | 4.47e-01 | 92.5% | 47.5% |
| 4953126 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.69 | 53.0 | 3.33e-01 | 92.5% | 15.5% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.69 | 54.0 | 4.37e-01 | 92.5% | 44.7% |
| 4385616 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 55.0 | 3.98e-01 | 92.5% | 31.7% |
| 3408277 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 54.0 | 3.99e-01 | 92.5% | 51.3% |
| 4353448 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.67 | 53.0 | 4.72e-01 | 97.5% | 70.8% |
| 3651435 | 192.29.1.222 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › GATA_AreA | 0.67 | 56.0 | 4.72e-01 | 100.0% | 56.0% |
| 5044205 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.67 | 55.0 | 3.34e-01 | 97.5% | 15.9% |
| 3789440 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.67 | 57.0 | 4.06e-01 | 100.0% | 66.9% |
| 4151710 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.67 | 52.0 | 4.74e-01 | 95.0% | 75.0% |
| 3967403 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.67 | 52.0 | 4.61e-01 | 92.5% | 69.2% |
| 3294656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 52.0 | 3.04e-01 | 92.5% | 77.5% |
| 4638470 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.66 | 49.0 | 3.41e-01 | 92.5% | 21.8% |
| 3493417 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.65 | 48.0 | 3.37e-01 | 92.5% | 23.7% |
| 3585791 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 49.0 | 4.20e-01 | 92.5% | 60.0% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.63 | 53.0 | 3.91e-01 | 95.0% | 38.1% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.63 | 51.0 | 3.25e-01 | 92.5% | 17.4% |
| 4039238 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.63 | 50.0 | 4.66e-01 | 97.5% | 85.5% |
| 5071097 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.59 | 48.0 | 2.89e-01 | 92.5% | 53.3% |
| 3681927 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.59 | 45.0 | 2.90e-01 | 90.0% | 16.0% |
| 3448960 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.58 | 51.0 | 4.01e-01 | 100.0% | 60.0% |
| 3920125 | 3755.3.1.450 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uso1_p115_C | 0.58 | 42.0 | 2.81e-01 | 85.0% | 94.4% |
| 4338737 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.58 | 49.0 | 4.75e-01 | 100.0% | 100.0% |
| 3742731 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.57 | 43.0 | 3.09e-01 | 95.0% | 25.8% |
| 4132106 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.51 | 40.0 | 3.27e-01 | 87.5% | 90.0% |