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OQ383211.1__WDS62456.1__UFRH6_26__00025
Bact-VirOQ383211.1__WDS62456.1__UFRH6_26__00025
Identity
- Accession:
- OQ383211 ↗
- Kingdom:
- phage
Quality
61.5
mean pLDDT
Taxonomy
TaxID: 3028120
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03869.21 best | Arc | 60.0 | 2.20e-16 | 81.5% | 82.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qoqC00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.94 | 80.0 | 8.39e-01 | 90.7% | 98.0% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.82 | 70.0 | 5.62e-01 | 90.7% | 88.5% |
| 2kelA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.81 | 61.0 | 6.55e-01 | 87.0% | 95.7% |
| 3gg7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.77 | 53.0 | 3.39e-01 | 72.2% | 99.2% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.66 | 44.0 | 3.37e-01 | 70.4% | 30.8% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 44.0 | 4.73e-01 | 72.2% | 95.7% |
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 44.0 | 4.23e-01 | 77.8% | 66.1% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.60 | 42.0 | 3.65e-01 | 75.9% | 75.6% |
| 1wivA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 37.0 | 3.42e-01 | 74.1% | 47.9% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 45.0 | 4.24e-01 | 90.7% | 76.1% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.55 | 45.0 | 3.24e-01 | 96.3% | 75.0% |
| 2mgwA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 36.0 | 3.73e-01 | 70.4% | 73.1% |
| 2gmsB01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 36.0 | 2.32e-01 | 72.2% | 80.0% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 4.26e-01 | 94.4% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980496 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.94 | 65.0 | 4.53e-01 | 72.2% | 26.7% |
| 4058428 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.91 | 68.0 | 6.78e-01 | 77.8% | 76.4% |
| 3981833 | 101.1.11.11 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 | 0.90 | 68.0 | 5.54e-01 | 79.6% | 45.7% |
| 4970117 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 61.0 | 5.02e-01 | 72.2% | 43.3% |
| 4994233 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.88 | 61.0 | 5.25e-01 | 72.2% | 48.8% |
| 3586991 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 58.0 | 5.11e-01 | 70.4% | 49.3% |
| 4980865 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.87 | 68.0 | 5.86e-01 | 83.3% | 60.0% |
| 4993165 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.86 | 60.0 | 4.86e-01 | 72.2% | 41.1% |
| 5074942 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.85 | 58.0 | 5.20e-01 | 72.2% | 52.0% |
| 3985544 | 101.1.11.65 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg | 0.84 | 63.0 | 6.30e-01 | 81.5% | 81.8% |
| 4984124 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.84 | 61.0 | 5.74e-01 | 79.6% | 64.6% |
| 3955892 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.83 | 60.0 | 6.19e-01 | 75.9% | 82.0% |
| 4928595 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.83 | 59.0 | 4.63e-01 | 74.1% | 92.4% |
| 5050855 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.83 | 61.0 | 6.07e-01 | 77.8% | 76.4% |
| 4992168 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.82 | 60.0 | 5.04e-01 | 77.8% | 87.8% |
| 162036 | 101.1.11.28 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › NikA-like | 0.82 | 56.0 | 5.73e-01 | 70.4% | 74.5% |
| 5033202 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.81 | 64.0 | 5.37e-01 | 85.2% | 51.1% |
| 5012232 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.81 | 62.0 | 6.25e-01 | 87.0% | 81.8% |
| 4958205 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.80 | 54.0 | 5.64e-01 | 70.4% | 76.0% |
| 5011906 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.80 | 58.0 | 5.79e-01 | 81.5% | 76.4% |
| 2625223 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.79 | 58.0 | 5.85e-01 | 85.2% | 78.2% |
| 5031025 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.78 | 62.0 | 6.45e-01 | 92.6% | 94.0% |
| 4946062 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.74 | 61.0 | 6.32e-01 | 92.6% | 100.0% |
| 4486406 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.66 | 48.0 | 3.84e-01 | 77.8% | 58.2% |
| 3174869 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 43.0 | 4.11e-01 | 75.9% | 56.9% |
| 4978071 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.65 | 44.0 | 2.70e-01 | 70.4% | 18.2% |
| 5027746 | 7573.1.1.3 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth | 0.60 | 43.0 | 3.04e-01 | 75.9% | 71.5% |
| 3698234 | 103.1.1.88 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF27606 | 0.59 | 39.0 | 3.94e-01 | 74.1% | 67.3% |
| 3985237 | 144.1.1.9 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › DUF1615 | 0.59 | 42.0 | 3.75e-01 | 79.6% | 51.8% |
| 4008918 | 632.3.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 | 0.59 | 42.0 | 3.75e-01 | 79.6% | 51.8% |
| 3958332 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.58 | 41.0 | 2.83e-01 | 75.9% | 70.8% |
| 3656957 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.55 | 40.0 | 3.61e-01 | 79.6% | 57.5% |
| 4626289 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.54 | 43.0 | 4.10e-01 | 87.0% | 81.5% |
| 3891662 | 601.15.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › PA28_N,PA28_C | 0.54 | 37.0 | 2.40e-01 | 70.4% | 84.4% |
| 3588137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 44.0 | 4.42e-01 | 88.9% | 90.9% |
| 3295850 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.52 | 35.0 | 3.60e-01 | 72.2% | 80.0% |
D2
medium
residues 55-126