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OQ383211.1__WDS62498.1__UFRH6_70__00067
Bact-VirOQ383211.1__WDS62498.1__UFRH6_70__00067
Identity
- Accession:
- OQ383211 ↗
- Kingdom:
- phage
Quality
94.9
mean pLDDT
Taxonomy
TaxID: 3028120
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-67
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 64.0 | 5.41e-01 | 91.5% | 60.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 62.0 | 5.83e-01 | 91.5% | 93.1% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.76 | 62.0 | 5.03e-01 | 89.4% | 69.4% |
| 2x43S00 | 6.10.140.1430 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 60.0 | 5.47e-01 | 97.9% | 73.1% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 63.0 | 4.85e-01 | 100.0% | 68.2% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.70 | 57.0 | 5.24e-01 | 100.0% | 79.4% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.70 | 58.0 | 4.48e-01 | 97.9% | 92.0% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 54.0 | 5.09e-01 | 89.4% | 81.7% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.69 | 56.0 | 4.69e-01 | 95.7% | 60.2% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.69 | 56.0 | 4.18e-01 | 100.0% | 37.2% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.68 | 52.0 | 5.06e-01 | 83.0% | 86.3% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 56.0 | 3.64e-01 | 100.0% | 74.1% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.67 | 58.0 | 5.01e-01 | 100.0% | 61.8% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 56.0 | 5.06e-01 | 100.0% | 82.4% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 55.0 | 4.50e-01 | 97.9% | 51.0% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 55.0 | 4.35e-01 | 97.9% | 50.5% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.66 | 50.0 | 5.10e-01 | 83.0% | 88.9% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.65 | 54.0 | 4.14e-01 | 100.0% | 47.9% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 47.0 | 4.56e-01 | 76.6% | 66.0% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.65 | 47.0 | 4.08e-01 | 83.0% | 69.5% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 53.0 | 4.02e-01 | 100.0% | 44.6% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.64 | 55.0 | 5.01e-01 | 97.9% | 96.9% |
| 3i9wA00 | 1.20.58.920 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 49.0 | 3.15e-01 | 91.5% | 16.7% |
| 3htaC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 52.0 | 3.55e-01 | 100.0% | 29.1% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 52.0 | 3.40e-01 | 97.9% | 54.3% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.61 | 50.0 | 4.34e-01 | 100.0% | 77.8% |
| 1ig8A03 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.60 | 49.0 | 3.12e-01 | 97.9% | 17.4% |
| 3gwnA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.60 | 49.0 | 3.85e-01 | 100.0% | 83.2% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.59 | 49.0 | 3.97e-01 | 100.0% | 54.5% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.58 | 45.0 | 3.79e-01 | 89.4% | 53.5% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 45.0 | 3.85e-01 | 97.9% | 49.5% |
| 1nkvB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.04e-01 | 97.9% | 20.3% |
| 7dukB01 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 39.0 | 3.95e-01 | 72.3% | 91.3% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 42.0 | 3.01e-01 | 83.0% | 46.7% |
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 40.0 | 3.50e-01 | 95.7% | 52.6% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.80e-01 | 100.0% | 98.4% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 39.0 | 3.85e-01 | 97.9% | 100.0% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 43.0 | 3.95e-01 | 100.0% | 89.7% |
| 7e42A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 43.0 | 3.76e-01 | 97.9% | 63.5% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 41.0 | 3.75e-01 | 100.0% | 91.4% |
| 4h03A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.51 | 39.0 | 2.77e-01 | 97.9% | 72.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1871246 | 109.4.1.1314 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_11 | 0.74 | 50.0 | 3.34e-01 | 70.2% | 20.6% |
| 3286502 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.74 | 65.0 | 5.08e-01 | 100.0% | 62.0% |
| 3597523 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.72 | 59.0 | 3.68e-01 | 100.0% | 33.4% |
| 3916831 | 109.4.1.1198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Meckelin | 0.71 | 63.0 | 3.81e-01 | 100.0% | 19.0% |
| 3389960 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 57.0 | 4.74e-01 | 91.5% | 54.1% |
| 4172555 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.70 | 59.0 | 4.59e-01 | 95.7% | 80.0% |
| 4255360 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.68 | 60.0 | 3.67e-01 | 100.0% | 16.1% |
| 4946169 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.68 | 58.0 | 3.82e-01 | 100.0% | 24.0% |
| 4453428 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.68 | 56.0 | 3.52e-01 | 100.0% | 33.7% |
| 3388455 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 59.0 | 4.44e-01 | 100.0% | 47.8% |
| 4505128 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.67 | 56.0 | 4.53e-01 | 93.6% | 81.1% |
| 3497236 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 57.0 | 3.53e-01 | 100.0% | 19.3% |
| 3956906 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.67 | 54.0 | 4.66e-01 | 91.5% | 60.0% |
| 3163939 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 53.0 | 5.23e-01 | 91.5% | 84.0% |
| 4821793 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.66 | 51.0 | 4.89e-01 | 85.1% | 74.1% |
| 3788919 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.66 | 56.0 | 3.35e-01 | 100.0% | 14.3% |
| 5000432 | 101.1.17.1 ↗ | alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e | 0.66 | 54.0 | 4.50e-01 | 97.9% | 55.6% |
| 4529629 | 109.4.1.549 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS | 0.64 | 47.0 | 2.83e-01 | 83.0% | 11.0% |
| 3478267 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.63 | 49.0 | 4.31e-01 | 91.5% | 61.3% |
| 4242465 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.62 | 51.0 | 4.22e-01 | 100.0% | 50.5% |
| 3087398 | 541.1.1.2 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 | 0.62 | 44.0 | 4.13e-01 | 83.0% | 81.5% |
| 3831185 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 48.0 | 4.39e-01 | 97.9% | 94.3% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.60 | 52.0 | 4.63e-01 | 100.0% | 67.1% |
| 5058952 | 138.1.1.38 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › MutL_C | 0.60 | 42.0 | 4.06e-01 | 97.9% | 63.3% |
| 3997160 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.60 | 48.0 | 3.94e-01 | 97.9% | 58.0% |
| 5039745 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.60 | 47.0 | 3.17e-01 | 100.0% | 32.0% |
| 3512559 | 192.1.1.37 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 | 0.59 | 48.0 | 4.47e-01 | 100.0% | 87.7% |
| 3212198 | 5015.1.1.0 ↗ | extended segments › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex | 0.59 | 41.0 | 4.14e-01 | 80.9% | 70.8% |
| 5000806 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.58 | 43.0 | 3.25e-01 | 78.7% | 69.6% |
| 4985730 | 7545.1.1.0 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like | 0.57 | 45.0 | 3.33e-01 | 87.2% | 69.2% |
| 3679373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 45.0 | 4.21e-01 | 97.9% | 92.3% |
| 5065296 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.57 | 39.0 | 3.73e-01 | 76.6% | 65.0% |
| 4581714 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.56 | 46.0 | 3.01e-01 | 100.0% | 25.1% |
| 3980428 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.55 | 44.0 | 3.97e-01 | 100.0% | 69.3% |
| 3575777 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.55 | 38.0 | 3.74e-01 | 72.3% | 68.0% |
| 4952808 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.58e-01 | 97.9% | 61.8% |