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OQ401623.1__WED25023.1__CRP901_gp04__00004

Bact-Vir

OQ401623.1__WED25023.1__CRP901_gp04__00004

Identity

Accession:
OQ401623 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-901

TaxID: 3032256

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-93
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.72 36.0 3.75e-01 72.5% 51.2%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 46.0 4.03e-01 93.4% 47.1%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 41.0 2.77e-01 87.9% 17.9%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 36.0 3.30e-01 84.6% 42.5%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 46.0 3.83e-01 79.1% 44.6%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 39.0 3.32e-01 89.0% 38.9%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 43.0 3.78e-01 71.4% 93.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.62 54.0 4.62e-01 100.0% 59.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 37.0 4.35e-01 80.2% 91.9%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 53.0 4.32e-01 100.0% 54.4%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.82e-01 85.7% 53.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 46.0 3.47e-01 86.8% 45.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 51.0 4.29e-01 95.6% 60.0%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.58 41.0 3.83e-01 73.6% 59.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.58 40.0 4.27e-01 86.8% 86.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.30e-01 84.6% 90.8%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 50.0 4.18e-01 98.9% 70.5%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 41.0 3.71e-01 98.9% 53.9%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.87e-01 87.9% 63.7%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 45.0 3.18e-01 87.9% 92.4%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 41.0 2.96e-01 79.1% 30.8%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 41.0 2.95e-01 79.1% 31.4%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.79e-01 97.8% 87.8%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.54 42.0 3.55e-01 97.8% 48.1%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 4.15e-01 98.9% 90.8%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.86e-01 96.7% 61.3%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.37e-01 87.9% 59.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 39.0 4.22e-01 95.6% 100.0%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 46.0 3.13e-01 94.5% 31.4%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.67e-01 92.3% 63.8%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.48e-01 83.5% 72.2%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 45.0 3.98e-01 95.6% 70.9%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.52 38.0 3.30e-01 76.9% 60.7%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.94e-01 89.0% 38.1%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 44.0 3.90e-01 95.6% 72.7%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.80e-01 93.4% 20.8%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.39e-01 82.4% 63.4%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.50 40.0 3.94e-01 100.0% 78.4%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.84e-01 93.4% 92.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 44.0 3.83e-01 96.7% 83.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.50 39.0 2.66e-01 85.7% 34.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3695698 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.73 52.0 4.49e-01 100.0% 48.6%
4024769 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.66 41.0 4.74e-01 94.5% 87.7%
3992567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 3.98e-01 71.4% 60.0%
4265072 9.1.1.68 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PF29184 0.64 50.0 4.65e-01 84.6% 80.0%
4011464 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 3.01e-01 79.1% 27.9%
3738249 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 45.0 3.01e-01 79.1% 28.2%
3483808 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.60 38.0 4.21e-01 84.6% 82.9%
3444588 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 47.0 3.15e-01 84.6% 34.8%
4784456 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 35.0 4.10e-01 74.7% 89.7%
3951937 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.59 43.0 4.35e-01 91.2% 77.5%
3905746 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 36.0 4.05e-01 79.1% 80.0%
3941306 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.59 44.0 2.96e-01 79.1% 28.6%
3938164 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 38.0 4.31e-01 80.2% 92.3%
3920675 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 37.0 4.03e-01 80.2% 77.3%
4875038 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.58 45.0 3.80e-01 81.3% 54.0%
3647542 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.58 41.0 3.22e-01 74.7% 97.6%
3228051 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.58 38.0 4.38e-01 81.3% 95.4%
3580035 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 2.91e-01 80.2% 47.7%
3672898 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.57 38.0 3.41e-01 83.5% 48.8%
9393 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.57 42.0 3.08e-01 76.9% 35.0%
3206009 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 3.06e-01 84.6% 44.1%
5035253 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 48.0 3.41e-01 92.3% 92.7%
4008120 5.1.5.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.57 45.0 4.10e-01 84.6% 88.3%
3736378 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 43.0 2.77e-01 81.3% 29.3%
3943894 77.1.1.7 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.56 45.0 4.04e-01 85.7% 85.6%
3930831 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.22e-01 100.0% 27.8%
3487868 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 36.0 4.12e-01 95.6% 92.3%
3698121 5.1.4.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sortilin-Vps10 0.55 49.0 2.75e-01 97.8% 9.1%
3709162 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.93e-01 97.8% 23.3%
3367314 5.1.4.510 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.55 48.0 3.32e-01 94.5% 31.2%
151649 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.54 43.0 2.95e-01 85.7% 38.1%
2051825 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.54 46.0 3.24e-01 93.4% 35.6%
5064859 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 39.0 2.90e-01 75.8% 37.1%
3923721 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.76e-01 80.2% 29.9%
3920853 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.54 43.0 3.64e-01 100.0% 51.3%
4003669 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.54 46.0 2.91e-01 94.5% 19.2%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 41.0 2.89e-01 90.1% 27.0%
3980680 3308.2.1.2 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › PF27031 0.53 46.0 3.77e-01 97.8% 51.2%
5043802 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 40.0 3.72e-01 81.3% 74.8%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.96e-01 93.4% 26.4%
3809562 883.1.1.20 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.52 42.0 3.33e-01 89.0% 97.0%
3363566 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 45.0 4.54e-01 95.6% 100.0%
3553582 5.1.4.283 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, WD40_APC4_C-half 0.52 44.0 2.91e-01 98.9% 28.3%
3573723 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 45.0 2.80e-01 95.6% 17.1%
3929256 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 45.0 3.90e-01 96.7% 79.3%
3962692 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 4.15e-01 91.2% 91.0%
3890928 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.51 45.0 3.56e-01 96.7% 79.4%
5078522 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 43.0 4.19e-01 96.7% 86.7%
5038627 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 44.0 3.06e-01 100.0% 37.5%
3934016 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.79e-01 92.3% 34.5%