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OQ401623.1__WED25028.1__CRP901_gp09__00009
Bact-VirOQ401623.1__WED25028.1__CRP901_gp09__00009
Identity
- Accession:
- OQ401623 ↗
- Kingdom:
- phage
Quality
96.5
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85
Domain cluster:
rep: OY757066.1__CAK1257060.1__K70PH128C1_LOCUS49__00049__D138-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19905.5 best | DUF6378 | 107.7 | 3.90e-31 | 97.6% | 98.8% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mmbA00 | 4.10.640.20 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › | 0.68 | 48.0 | 4.42e-01 | 91.6% | 57.0% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 49.0 | 3.97e-01 | 77.1% | 80.0% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.64 | 52.0 | 4.56e-01 | 100.0% | 57.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 43.0 | 4.72e-01 | 86.7% | 91.9% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.62 | 55.0 | 4.48e-01 | 97.6% | 83.0% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 42.0 | 3.88e-01 | 100.0% | 56.7% |
| 1foeA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.59 | 48.0 | 3.62e-01 | 88.0% | 51.5% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 48.0 | 4.30e-01 | 88.0% | 78.3% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 4.08e-01 | 94.0% | 99.3% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.47e-01 | 81.9% | 81.2% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.58 | 40.0 | 3.99e-01 | 88.0% | 69.4% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 44.0 | 3.78e-01 | 92.8% | 49.7% |
| 1kpgD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 47.0 | 3.25e-01 | 90.4% | 29.7% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 46.0 | 3.66e-01 | 86.7% | 61.0% |
| 3bh1A02 | 1.20.1570.10 | Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like | 0.56 | 40.0 | 3.76e-01 | 74.7% | 94.1% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 42.0 | 3.13e-01 | 81.9% | 45.0% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 46.0 | 3.44e-01 | 91.6% | 47.0% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 47.0 | 4.18e-01 | 100.0% | 100.0% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 45.0 | 3.87e-01 | 96.4% | 97.3% |
| 2o57A01 | 1.10.287.840 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like | 0.54 | 45.0 | 4.17e-01 | 89.2% | 86.7% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 33.0 | 3.25e-01 | 89.2% | 56.8% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 4.37e-01 | 88.0% | 96.5% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 4.37e-01 | 92.8% | 89.6% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 4.34e-01 | 88.0% | 96.5% |
| 1h97A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 43.0 | 3.72e-01 | 94.0% | 100.0% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.53 | 31.0 | 3.50e-01 | 77.1% | 76.3% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.53 | 41.0 | 3.54e-01 | 84.3% | 75.0% |
| 2pziB03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 43.0 | 3.47e-01 | 85.5% | 90.0% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 41.0 | 3.70e-01 | 86.7% | 83.3% |
| 4uwhA01 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.52 | 43.0 | 3.27e-01 | 94.0% | 41.4% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 38.0 | 3.95e-01 | 94.0% | 90.7% |
| 1xwjA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 47.0 | 4.01e-01 | 100.0% | 74.6% |
| 2yqdA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 40.0 | 3.63e-01 | 88.0% | 73.3% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.51 | 40.0 | 4.04e-01 | 89.2% | 87.2% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.50 | 42.0 | 3.48e-01 | 92.8% | 51.0% |
| 1t9xA05 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.50 | 43.0 | 3.24e-01 | 98.8% | 45.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014403 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.68 | 55.0 | 4.27e-01 | 100.0% | 39.5% |
| 1288501 | 3875.1.1.1 ↗ | alpha arrays › Uncharacterized protein ABAYE3142 › Uncharacterized protein ABAYE3142 › Uncharacterized protein ABAYE3142 › DUF4951 | 0.68 | 48.0 | 4.42e-01 | 91.6% | 57.0% |
| 3483761 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.66 | 52.0 | 4.08e-01 | 83.1% | 61.2% |
| 3228201 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.65 | 57.0 | 4.35e-01 | 100.0% | 42.7% |
| 3530780 | 310.2.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23 | 0.65 | 47.0 | 3.96e-01 | 74.7% | 79.2% |
| 5003426 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 4.18e-01 | 81.9% | 53.9% |
| 3250485 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 50.0 | 3.89e-01 | 81.9% | 80.0% |
| 5034435 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.64 | 39.0 | 4.04e-01 | 71.1% | 63.7% |
| 3677410 | 371.1.1.7 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › zf-RVT | 0.63 | 48.0 | 3.86e-01 | 80.7% | 56.9% |
| 4959934 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.63 | 47.0 | 4.91e-01 | 77.1% | 93.3% |
| 3290948 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.63 | 42.0 | 3.97e-01 | 80.7% | 57.0% |
| 4157135 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 43.0 | 3.34e-01 | 75.9% | 33.3% |
| 4978032 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.62 | 55.0 | 4.22e-01 | 100.0% | 43.8% |
| 3634278 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 56.0 | 4.02e-01 | 100.0% | 38.2% |
| 3965374 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.62 | 55.0 | 4.25e-01 | 100.0% | 47.6% |
| 5009979 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.61 | 54.0 | 3.48e-01 | 100.0% | 21.9% |
| 3400282 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 47.0 | 3.53e-01 | 100.0% | 34.1% |
| 3947647 | 159.1.2.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dATP-dGTP_PPHyd | 0.60 | 43.0 | 4.13e-01 | 98.8% | 66.3% |
| 3258587 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.59 | 48.0 | 3.70e-01 | 86.7% | 57.2% |
| 3602716 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.59 | 45.0 | 3.94e-01 | 81.9% | 65.6% |
| 5030945 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.59 | 48.0 | 4.48e-01 | 98.8% | 72.4% |
| 3266845 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.59 | 53.0 | 4.40e-01 | 100.0% | 93.1% |
| 3943120 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 51.0 | 3.99e-01 | 100.0% | 48.6% |
| 4945594 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 50.0 | 3.84e-01 | 100.0% | 42.9% |
| 5012392 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.57 | 45.0 | 3.20e-01 | 89.2% | 95.5% |
| 3972478 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 45.0 | 4.06e-01 | 100.0% | 63.9% |
| 3643402 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.56 | 44.0 | 3.78e-01 | 88.0% | 77.1% |
| 3236092 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.55 | 42.0 | 4.33e-01 | 89.2% | 88.7% |
| 54312 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.54 | 42.0 | 4.05e-01 | 84.3% | 85.6% |
| 3787124 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 2.84e-01 | 91.6% | 26.3% |
| 1501287 | 601.52.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 | 0.52 | 45.0 | 3.27e-01 | 100.0% | 81.8% |
| 4948715 | 140.1.1.9 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3 | 0.52 | 46.0 | 3.70e-01 | 100.0% | 51.5% |
| 3190827 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 38.0 | 2.94e-01 | 80.7% | 52.6% |
| 5061325 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 38.0 | 4.19e-01 | 100.0% | 98.5% |
| 3972698 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 38.0 | 3.84e-01 | 100.0% | 77.6% |
| 4115362 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 43.0 | 3.33e-01 | 100.0% | 44.3% |
| 2635145 | 5000.3.1.6 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › M11L | 0.51 | 38.0 | 3.31e-01 | 84.3% | 74.6% |
| 3387475 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 42.0 | 3.06e-01 | 100.0% | 54.4% |
| 3281752 | 5050.1.1.20 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_4 | 0.50 | 41.0 | 3.38e-01 | 100.0% | 45.7% |